View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19406_low_5 (Length: 546)

Name: NF19406_low_5
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19406_low_5
NF19406_low_5
[»] chr4 (6 HSPs)
chr4 (1-530)||(34614846-34615376)
chr4 (288-333)||(18513249-18513294)
chr4 (284-329)||(18783987-18784032)
chr4 (289-330)||(44796971-44797012)
chr4 (297-333)||(5654608-5654644)
chr4 (297-333)||(10546154-10546190)
[»] chr7 (6 HSPs)
chr7 (287-333)||(44172897-44172943)
chr7 (284-333)||(21247740-21247789)
chr7 (283-333)||(38134409-38134459)
chr7 (287-332)||(30013202-30013247)
chr7 (284-333)||(31808513-31808562)
chr7 (284-332)||(36314631-36314679)
[»] chr5 (4 HSPs)
chr5 (284-333)||(38749567-38749616)
chr5 (284-333)||(28296334-28296383)
chr5 (297-333)||(11596472-11596508)
chr5 (297-333)||(39342460-39342496)
[»] chr2 (4 HSPs)
chr2 (288-332)||(44605147-44605191)
chr2 (288-333)||(18570978-18571023)
chr2 (297-334)||(34007008-34007045)
chr2 (296-333)||(40681988-40682025)
[»] chr6 (2 HSPs)
chr6 (284-331)||(33419181-33419228)
chr6 (288-328)||(10157995-10158035)
[»] chr1 (3 HSPs)
chr1 (284-331)||(6427358-6427405)
chr1 (295-333)||(40747788-40747826)
chr1 (297-333)||(11571591-11571627)
[»] chr8 (2 HSPs)
chr8 (290-332)||(34201056-34201098)
chr8 (284-333)||(3508058-3508107)
[»] scaffold0022 (1 HSPs)
scaffold0022 (284-333)||(99899-99948)
[»] chr3 (1 HSPs)
chr3 (288-333)||(9210833-9210878)


Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 34614846 - 34615376
Alignment:
Q  1 aaagaaaaatatcaaaattgagaccatat-ctgaagaatgcaatatcttagtaaaccacaacttaccggacgaaagaagttgcacaagaatatcaaccat 99  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34614846 aaagaaaaatatcaaaattgagaccatattctgaagaatgcaatatcttagtaaaccacaacttaccggacgaaagaagttgcacaagaatatcaaccat 34614945  T
Q  100 ttttccaatattctcaggtgtatccttgcagaaaagaggcagtcctcttatcgcttgcacccgaacctgtacagcaatagaaaacaccaaacaaatacaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34614946 ttttccaatattctcaggtgtatccttgcagaaaagaggcagtcctcttatcgcttgcacccgaacctgtacagcagtagaaaacaccaaacaaatacaa 34615045  T
Q  200 acatcagctcatacaaaattcactgtagtgctttaaagaccaaaagtaacctctgttacaccgatgctcctgattgaaagtgtgaccaacacatgtaatt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  34615046 acatcagctcatacaaaattcactgtagtgctttaaagaccaaaagtaacctctgtaacaccgatgctcctgattgaaagtgtgaccaacacgtgtaatt 34615145  T
Q  300 acattgaattacgtcaatttctcaaattattatcttgtcatgtatcaaatgaaatagagaataacaaatgaaaagatatcacagaaagggcataccccga 399  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34615146 acattgaattacgtcaatttctataattattatcgtgtcatgtatcaaatgaaatagagaataacaaatgaaaagatatcacagaaaaggcataccccga 34615245  T
Q  400 gttcatcagcttcaaccaaatcaagatgagtatcgagtgcaggaccggaaagttcaggaaagaacttgaagaacttaggaataagctgtgcagcgagttg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34615246 gttcatcagcttcaaccaaatcaagatgagtatcgagtgcaggaccggaaagttcaggaaagaacttgaagaacttaggaataagctgtgcagcgagttg 34615345  T
Q  500 tttagctttaacactagtgttagctgtatct 530  Q
    |||||||||||||||||||||||||||||||    
T  34615346 tttagctttaacactagtgttagctgtatct 34615376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 18513249 - 18513294
Alignment:
Q  288 acacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||| | |||||||||||||| |||| |||||||||||||||||    
T  18513249 acacatatgattacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 18784032 - 18783987
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattat 329  Q
    |||||||| |||||||||||| |||||| ||| |||||||||||||    
T  18784032 accaacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 44796971 - 44797012
Alignment:
Q  289 cacatgtaattacattgaattacgtcaatttctcaaattatt 330  Q
    |||||||||||||||||||||| || | ||||||||||||||    
T  44796971 cacatgtaattacattgaattatgttattttctcaaattatt 44797012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 5654608 - 5654644
Alignment:
Q  297 attacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||||||| |||| |||||||||||||||||    
T  5654608 attacattgaattatgtcattttctcaaattattatc 5654644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 10546190 - 10546154
Alignment:
Q  297 attacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||||||| |||| |||||||||||||||||    
T  10546190 attacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 44172897 - 44172943
Alignment:
Q  287 aacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    ||||||||| |||||||||||||| |||| |||||||||||||||||    
T  44172897 aacacatgtgattacattgaattatgtcattttctcaaattattatc 44172943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 21247740 - 21247789
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||  | ||||||||||||||||||| |||||||||||||||||    
T  21247740 accaacacacatgattacattgaattacgtcattttctcaaattattatc 21247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 38134409 - 38134459
Alignment:
Q  283 gaccaacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||| |||||| | |||||||||||||| |||| |||||||||||||||||    
T  38134409 gaccgacacatatgattacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 30013247 - 30013202
Alignment:
Q  287 aacacatgtaattacattgaattacgtcaatttctcaaattattat 332  Q
    ||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  30013247 aacacatgtgattatattgaattacgtcattttctcatattattat 30013202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 31808513 - 31808562
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  31808513 accaacacatgtgattacattgacttgtgtcattttctcaaattattatc 31808562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 36314631 - 36314679
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattattat 332  Q
    |||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  36314631 accaacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 38749567 - 38749616
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||| |||||||||||||||| |||| ||| |||||||||||||    
T  38749567 accaacacatataattacattgaattatgtcattttttcaaattattatc 38749616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 28296383 - 28296334
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||| | | |||||||||||| |||| |||||||||||||||||    
T  28296383 accaacacatatgagtacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 11596472 - 11596508
Alignment:
Q  297 attacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||||||| |||| |||||||||||||||||    
T  11596472 attacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 39342496 - 39342460
Alignment:
Q  297 attacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||||||| |||||||| |||||||||||||    
T  39342496 attacattgaattatgtcaatttttcaaattattatc 39342460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 44605147 - 44605191
Alignment:
Q  288 acacatgtaattacattgaattacgtcaatttctcaaattattat 332  Q
    ||||||||||||||||||||||| || | ||||||||||||||||    
T  44605147 acacatgtaattacattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 18571023 - 18570978
Alignment:
Q  288 acacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||| | |||||||||||||| |||| |||||||||||||||||    
T  18571023 acacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 34007008 - 34007045
Alignment:
Q  297 attacattgaattacgtcaatttctcaaattattatct 334  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  34007008 attacactgaattatgtcaatttctcaaattattatct 34007045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 40682025 - 40681988
Alignment:
Q  296 aattacattgaattacgtcaatttctcaaattattatc 333  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  40682025 aattacattgaattatgtcattttctcaaattattatc 40681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 33419228 - 33419181
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattatta 331  Q
    |||||||||| ||||||||||||||||  ||||||| |||||||||||    
T  33419228 accaacacatataattacattgaattatatcaatttttcaaattatta 33419181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 10158035 - 10157995
Alignment:
Q  288 acacatgtaattacattgaattacgtcaatttctcaaatta 328  Q
    |||||||| |||||||||||||| |||| ||||||||||||    
T  10158035 acacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 6427405 - 6427358
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattatta 331  Q
    |||||||||| |||||||||||||||| || | |||||||||||||||    
T  6427405 accaacacatataattacattgaattatgtgattttctcaaattatta 6427358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 40747788 - 40747826
Alignment:
Q  295 taattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  40747788 taattacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 11571627 - 11571591
Alignment:
Q  297 attacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||||||| |||| |||||||||||||||||    
T  11571627 attacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 34201056 - 34201098
Alignment:
Q  290 acatgtaattacattgaattacgtcaatttctcaaattattat 332  Q
    |||| |||||||||||||||| |||| ||||||||||||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 3508107 - 3508058
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||| | |||||||||||||| || | |||||||||||||||||    
T  3508107 accaacacatatgattacattgaattatgttattttctcaaattattatc 3508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 99948 - 99899
Alignment:
Q  284 accaacacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||||| |||||||||||||||| || | ||||| |||||||||||    
T  99948 accaacacatataattacattgaattatgttattttctaaaattattatc 99899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 9210833 - 9210878
Alignment:
Q  288 acacatgtaattacattgaattacgtcaatttctcaaattattatc 333  Q
    |||||||| ||| |||||||||| |||| |||||||||||||||||    
T  9210833 acacatgtgattccattgaattatgtcattttctcaaattattatc 9210878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University