View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19406_low_6 (Length: 542)

Name: NF19406_low_6
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19406_low_6
NF19406_low_6
[»] chr8 (3 HSPs)
chr8 (219-507)||(45163755-45164040)
chr8 (219-320)||(24948543-24948643)
chr8 (120-160)||(30473881-30473921)
[»] chr4 (5 HSPs)
chr4 (13-158)||(26724029-26724174)
chr4 (220-329)||(40835481-40835590)
chr4 (222-322)||(29888744-29888843)
chr4 (222-302)||(40608233-40608313)
chr4 (219-310)||(11669628-11669718)
[»] chr1 (4 HSPs)
chr1 (13-158)||(45115427-45115573)
chr1 (219-297)||(47383627-47383705)
chr1 (220-322)||(19596510-19596612)
chr1 (120-153)||(36465887-36465920)
[»] chr2 (5 HSPs)
chr2 (13-157)||(2988805-2988950)
chr2 (222-312)||(13567699-13567789)
chr2 (261-324)||(14438927-14438990)
chr2 (220-311)||(30856636-30856725)
chr2 (219-266)||(40298793-40298840)
[»] chr5 (4 HSPs)
chr5 (223-317)||(38256918-38257012)
chr5 (234-318)||(1054225-1054309)
chr5 (219-322)||(14536129-14536232)
chr5 (219-251)||(29302481-29302513)
[»] chr6 (2 HSPs)
chr6 (350-458)||(24124347-24124455)
chr6 (120-157)||(15044914-15044951)
[»] chr3 (4 HSPs)
chr3 (219-284)||(215600-215665)
chr3 (90-157)||(5189787-5189854)
chr3 (120-158)||(49506348-49506386)
chr3 (120-160)||(12264392-12264432)
[»] chr7 (7 HSPs)
chr7 (219-293)||(42987724-42987797)
chr7 (261-311)||(17298587-17298637)
chr7 (262-310)||(6204050-6204098)
chr7 (245-300)||(19777820-19777875)
chr7 (120-157)||(21670173-21670210)
chr7 (120-157)||(27138528-27138565)
chr7 (118-158)||(27903416-27903456)
[»] scaffold0468 (1 HSPs)
scaffold0468 (500-532)||(10346-10378)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 219 - 507
Target Start/End: Complemental strand, 45164040 - 45163755
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 318  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45164040 cagtcacatcaattaatatcatttaattttattttcatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatctggggttgtgctcatct 45163941  T
Q  319 aagattatctctaagatgtaaaatgatgattgatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagataagttattcaa 418  Q
    |||| | |||  |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45163940 aagactttctacaagatgtaaaatgat---tgatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagacaagttattcaa 45163844  T
Q  419 tataaccaacacaatctctagccatgcataaattgcatacaatgaagataataagcccacaaagaacaaaacatgtgaagatttttggc 507  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45163843 tataaccaacacaatccctagccatgcataaattgcatacaatgaagataataagcccacaaagaacaaaacatgtgaagatttttggc 45163755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 24948543 - 24948643
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 318  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  24948543 cagtcacatcaattaatatcatttaattttattctcatttaatttttt-tatgttttgtgagtgtgtccaaatcattttgatttggggttgtgttcatct 24948641  T
Q  319 aa 320  Q
    ||    
T  24948642 aa 24948643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 30473921 - 30473881
Alignment:
Q  120 tatatgacctgtgcggcagtacgggtgaaaagtctagttgt 160  Q
    ||||||||| ||||||||| ||||||| |||||||||||||    
T  30473921 tatatgacccgtgcggcagcacgggtggaaagtctagttgt 30473881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 9e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 26724029 - 26724174
Alignment:
Q  13 actaacaacattctcttaaattattgttgtctttaaagttacgacattttaatattgagttgcgaccgtgttatataattttgcctttgtctattgtttt 112  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||||| |||||||||||||||    
T  26724029 actaacaacattctcttaatttattgttgtctttaaagttacaacattttaatattgagttgcgactgtgcgatataattttgcttttgtctattgtttt 26724128  T
Q  113 tgcattatatatgacctgtgcggcagtacgggtgaaaagtctagtt 158  Q
    |||||| ||||| ||| ||||||||| |||||||||||||||||||    
T  26724129 tgcattgtatataacccgtgcggcagcacgggtgaaaagtctagtt 26724174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 40835481 - 40835590
Alignment:
Q  220 agtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatcta 319  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  40835481 agtcacatcaactaatatcatttaattttattctcgtttaaatttttctatgttttgtgagtgtgtccaaatcattttgatttggggttgtgctcatcta 40835580  T
Q  320 agattatctc 329  Q
    ||||| ||||    
T  40835581 agattttctc 40835590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 222 - 322
Target Start/End: Original strand, 29888744 - 29888843
Alignment:
Q  222 tcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatctaag 321  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||||| ||| ||||||||||||||||||  |||||||||| | ||||||    
T  29888744 tcacatcaattaatatcatttaattttattctcatttaaa-ttttctatgttttgttagtatgcccaaatcattttgattcggggttgtgcccgtctaag 29888842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 40608233 - 40608313
Alignment:
Q  222 tcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatat 302  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  40608233 tcacatcaattaatatcatttaattttatttttattcaaatttttcaatgttttgtgagtgtacccaaatcattttgatat 40608313  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 11669628 - 11669718
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgt 310  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||||| ||| |||||||||| |||||||||||||||||| | |||||||    
T  11669628 cagtcaaatcaattaatatcatttaattt-attctcatttaaatttttttatattttgtgagtatgcccaaatcattttgatttagggttgt 11669718  T

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Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 45115573 - 45115427
Alignment:
Q  13 actaacaacattctcttaaattattgttgtctttaaagttac-gacattttaatattgagttgcgaccgtgttatataattttgcctttgtctattgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||||||  ||||||||||||||    
T  45115573 actaacaacattctcttaaattattgttgtctttaaagttactgacattttaatattgagttgcgactgtgcgatataattttgtttttgtctattgttt 45115474  T
Q  112 ttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagtt 158  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  45115473 ttgcattgtatatgacctgtgcgacatcacgggtgaaaagtctagtt 45115427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 47383705 - 47383627
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcatttt 297  Q
    ||||||||||||||||||| |||||||||||||  |||||||| ||||||||||||| |||||||| ||||| ||||||    
T  47383705 cagtcacatcaattaatattatttaattttattctcatttaaagttttctatgttttatgagtgtgtccaaaccatttt 47383627  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 19596510 - 19596612
Alignment:
Q  220 agtcacatcaattaatatcatttaattttatt-tccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 318  Q
    |||||| | |||||||||||||||||||| || ||  ||| | ||||||||||||| ||||||||| |||  |||||||||| || ||||||||||||||    
T  19596510 agtcactttaattaatatcatttaattttgttgtcgttttgagtttttctatgttt-gtgagtgtgtccatgtcattttgatttgcggttgtgctcatct 19596608  T
Q  319 aaga 322  Q
    ||||    
T  19596609 aaga 19596612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 36465887 - 36465920
Alignment:
Q  120 tatatgacctgtgcggcagtacgggtgaaaagtc 153  Q
    ||||||||||||||||||| ||||||||||||||    
T  36465887 tatatgacctgtgcggcagcacgggtgaaaagtc 36465920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 2988805 - 2988950
Alignment:
Q  13 actaacaacattctcttaaattattgttgtctttaaagttac-gacattttaatattgagttgcgaccgtgttatataattttgcctttgtctattgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||||||  ||||||||||||||    
T  2988805 actaacaacattctcttaaattattgttgtctttaaagttactgacattttaatattgagttgcgactgtgcgatataattttgtttttgtctattgttt 2988904  T
Q  112 ttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagt 157  Q
    ||||||| |||||||||  |||||||| ||||||||||||||||||    
T  2988905 ttgcattgtatatgacccatgcggcagcacgggtgaaaagtctagt 2988950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 13567789 - 13567699
Alignment:
Q  222 tcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgc 312  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||    
T  13567789 tcacatcgattaatatcattttattttattttcatttaaatttttccatgttttgtgagtatgcccaaatcattttgatttggagttgtgc 13567699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 14438990 - 14438927
Alignment:
Q  261 atttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatctaagatt 324  Q
    |||||| |||||||||| ||||||||||||||||||| || | ||||| |||||||| ||||||    
T  14438990 atttttttatgttttgtaagtgtgcccaaatcattttaatttagggttatgctcatcaaagatt 14438927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 30856636 - 30856725
Alignment:
Q  220 agtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtg 311  Q
    ||||||||||||||||||||||||||||| ||  | ||||| |||||| |  | || | ||||||||||||| |||||||| || |||||||    
T  30856636 agtcacatcaattaatatcatttaatttttttctcttttaattttttcaa--tattataagtgtgcccaaataattttgatttgaggttgtg 30856725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 40298840 - 40298793
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaattttt 266  Q
    ||||||||||||||| |||||||||||||||||   ||||||||||||    
T  40298840 cagtcacatcaattattatcatttaattttattcttatttaaattttt 40298793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 38257012 - 38256918
Alignment:
Q  223 cacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatc 317  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  38257012 cacatcaattaatatcatttaattttattctcatttaaatttttctatgttttgtgagtgtgcctaaatcattttgatttggggtcgtgcccatc 38256918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 1054225 - 1054309
Alignment:
Q  234 atatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 318  Q
    |||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||    
T  1054225 atatcaattaattttatttttatttaaatttttctatgtcttgtgagtgtgcccaaatcattttgatttagggttgtgcccatct 1054309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 14536232 - 14536129
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 318  Q
    ||||| |||||||| |||||| ||||||||| |   |||||| ||||| |||||||||||||||||| ||||||||||||||  |||||||||| |||||    
T  14536232 cagtcgcatcaattgatatcaattaattttactcttatttaattttttttatgttttgtgagtgtgctcaaatcattttgattcggggttgtgcccatct 14536133  T
Q  319 aaga 322  Q
    ||||    
T  14536132 aaga 14536129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 29302513 - 29302481
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatt 251  Q
    |||| ||||||||||||||||||||||||||||    
T  29302513 cagtgacatcaattaatatcatttaattttatt 29302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 350 - 458
Target Start/End: Original strand, 24124347 - 24124455
Alignment:
Q  350 gatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagataagttattcaatataaccaacacaatctctagccatgcataa 449  Q
    ||||||||||||||||| ||||||||||||| || |||| || |||||||||||||| |  |||||||||||||||||||| |||  |||||||||||||    
T  24124347 gatatccttgattcaacatcatccacctgtttcaataagtattgagaaaataaaagaaagattattcaatataaccaacaccatccgtagccatgcataa 24124446  T
Q  450 attgcatac 458  Q
    |||||||||    
T  24124447 attgcatac 24124455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 15044914 - 15044951
Alignment:
Q  120 tatatgacctgtgcggcagtacgggtgaaaagtctagt 157  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  15044914 tatatgacctgtgcggcagcacgggtggaaagtctagt 15044951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 215665 - 215600
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtg 284  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  215665 cagtcacatcaattaatatcatttaattttattctcatttaaatttttctatgttttgtgagtgtg 215600  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 5189854 - 5189787
Alignment:
Q  90 attttgcctttgtctattgtttttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagt 157  Q
    ||||||| |||||||| | ||||| ||||||||||||||  ||||| || ||||||| ||||||||||    
T  5189854 attttgcttttgtctactatttttacattatatatgacccttgcggtagcacgggtgtaaagtctagt 5189787  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 49506386 - 49506348
Alignment:
Q  120 tatatgacctgtgcggcagtacgggtgaaaagtctagtt 158  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  49506386 tatatgacccgtgcggcagtacgggtggaaagtctagtt 49506348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 12264392 - 12264432
Alignment:
Q  120 tatatgacctgtgcggcagtacgggtgaaaagtctagttgt 160  Q
    ||||||||| ||||||||| ||||||| |||||||||||||    
T  12264392 tatatgacccgtgcggcagcacgggtggaaagtctagttgt 12264432  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 42987797 - 42987724
Alignment:
Q  219 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatca 293  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  42987797 cagtcacatcaattaagatcatttaattt-attttcatttaaatttttctatgttttgtgagtgtgctcaaatca 42987724  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 17298637 - 17298587
Alignment:
Q  261 atttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtg 311  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  17298637 atttttttatgttttgtgagtgtgcccaaattattttgatttggggttgtg 17298587  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 6204098 - 6204050
Alignment:
Q  262 tttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgt 310  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  6204098 tttttctatgttttgtgagtgtgtctaaatcattttgatttggggttgt 6204050  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 19777820 - 19777875
Alignment:
Q  245 ttttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgat 300  Q
    |||||||  |||||||||||||||||||||| |||||| ||| |||||||||||||    
T  19777820 ttttattctcatttaaatttttctatgttttttgagtgagcctaaatcattttgat 19777875  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 21670173 - 21670210
Alignment:
Q  120 tatatgacctgtgcggcagtacgggtgaaaagtctagt 157  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  21670173 tatatgacctgtgcggcagcacgggtggaaagtctagt 21670210  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 27138565 - 27138528
Alignment:
Q  120 tatatgacctgtgcggcagtacgggtgaaaagtctagt 157  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  27138565 tatatgacctgtgcggcagcacgggtggaaagtctagt 27138528  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 27903456 - 27903416
Alignment:
Q  118 tatatatgacctgtgcggcagtacgggtgaaaagtctagtt 158  Q
    ||||||||||| ||||||||| ||||||| |||||||||||    
T  27903456 tatatatgacccgtgcggcagcacgggtggaaagtctagtt 27903416  T

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Target: scaffold0468 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 532
Target Start/End: Original strand, 10346 - 10378
Alignment:
Q  500 tttttggcttaattgcagttttggcctcctatg 532  Q
    ||||||||||||| |||||||||||||||||||    
T  10346 tttttggcttaatagcagttttggcctcctatg 10378  T

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