View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_7 (Length: 489)
Name: NF19406_low_7
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Complemental strand, 26166538 - 26166076
Alignment:
| Q |
16 |
tcttcttggtttctttctttgacttcagcactatacgtgcaatattgctttaataatacatggcattcccttgttgcaaaccaaccaaccaatgtttgta |
115 |
Q |
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| T |
26166538 |
tcttcttggtttctttctttgacttcagcactatacgtgcaatattgctttaataatacatggcattcccttgttgcaaaccaaccaaccaatgtttgta |
26166439 |
T |
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| Q |
116 |
agtgtttgtggattatggagaaaaagtaacaaattaatgtgagaatgaaccaaaattataacaaagaaaagtatgcatataaactataagattaagaaaa |
215 |
Q |
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| T |
26166438 |
agtgtttgtggattatggagaaaaagtaacaaattaatgtgggaatgaaccaaaattataacaaagaaaagtatgcatataaactataagattaagaaaa |
26166339 |
T |
|
| Q |
216 |
acaaagcacacattaataatacaattattaacatgtttcacctagcttataatctagggctatgtctacagacataggaacaaacaaggtttaatctcag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26166338 |
acaaagcacacattaataatacaattattaacatgtttcac----cttataatctagggctatgtctacagacataggaacaaacaaggtttaatctcag |
26166243 |
T |
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| Q |
316 |
aatgattatgtgatctcaagtaggacctcggcagtgatcggaatagactactgtaggcggagttacggattgttctgatcagttggattgatttcagctt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26166242 |
aatgattatgtgatctcaagtaggacctcggcagtgatcggaatagactactgtaagcggagttacggattgttctgatcagttggattgatgtcagctt |
26166143 |
T |
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| Q |
416 |
ctgtcaatggcagttaagttgtgctgcttctgccttagagttagatggttaagtatgaatacctttg |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26166142 |
ctgtcaatggcagttaagttgtgctgcttctgccttagagttagatggttaagtacgaatacctttg |
26166076 |
T |
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