View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_8 (Length: 485)
Name: NF19406_low_8
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 474
Target Start/End: Complemental strand, 43563006 - 43562537
Alignment:
| Q |
20 |
ttatggatgggacaaatgattcgacctgattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43563006 |
ttatggatgggacaaatgattcgacctgattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtc |
43562907 |
T |
|
| Q |
120 |
caatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacctgatggtacaatccccaaatgcatacattttcctct |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43562906 |
caatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacctgatggtacaatccccaaatgcatacattttcctct |
43562807 |
T |
|
| Q |
220 |
tcctactagagattgtcttttcaaaaattctctatttgacaaaacaactgttctcaaaatttggaatttcaataaggtaacctcttttcactcacatttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43562806 |
tcctactagagattgtcttttcaaaaattctctatttgacaaaacaactgttctcaaaatttggaatttcaacaaggtaacctcttttcactcacatttt |
43562707 |
T |
|
| Q |
320 |
tataccaaatttcaagtttaagttgattactaatcagtcactatcgatgatgtctcatctgtttgacagac---------------acatataatcatgt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43562706 |
tataccaaatttcaagtttaagttgattactaatcagttactatcgatgatgtctcatctgtttgacagacacatgtttgacagacacatataatcatgt |
43562607 |
T |
|
| Q |
405 |
ttaattaccttcattttcttataagcgttattgatatctatgtgttggtgtccagtacttgagtgttcat |
474 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43562606 |
ttaattaccttcattttcttataagtattattgatatctatgtgttggtgtctagtacttgagtgttcat |
43562537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 44956048 - 44956326
Alignment:
| Q |
20 |
ttatggatgggacaaatgattcgacctgattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44956048 |
ttatggatgggacaaatgattcgacctgattgggacatgtttcagtcggaccatatttgtgctaaatttcatgctggctcaagagctatttgtggtggtc |
44956147 |
T |
|
| Q |
120 |
caatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacctgatggtacaatccccaaatgcatacattttcctct |
219 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
44956148 |
caatttatttgagtgatgatgttggctttcatgactttgatctgattaagaaactcgtgttccctgatggtacaattccaaaatgcatacattttcctct |
44956247 |
T |
|
| Q |
220 |
tcctactagagattgtcttttcaaaaattctctatttgacaaaacaactgttctcaaaatttggaatttcaataaggta |
298 |
Q |
| |
|
|||||||| ||| |||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||| |||||| |
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| T |
44956248 |
tcctactacagactgtcttttcaaatatcctctatttgacaaaacaattgttctcaaaatttggaacttcaacaaggta |
44956326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 26171636 - 26171804
Alignment:
| Q |
20 |
ttatggatgggacaaatgattcgacctgattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtc |
119 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| | | ||| ||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
26171636 |
ttatggatgggacaattgattcaacctgattgggacatgttccagt---aacatatttgtgccaaatttcatgcaggttcaagagctatctgtggtggtc |
26171732 |
T |
|
| Q |
120 |
caatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacctgatggta |
191 |
Q |
| |
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|| ||||||||| ||||| |||||||||||||| ||||||| |||||||||| ||||| || |||||||||| |
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| T |
26171733 |
cagtttatttgaatgataatgttggctctcatgcctttgatctgattaagaagcttgttttccctgatggta |
26171804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 43975989 - 43976267
Alignment:
| Q |
20 |
ttatggatgggacaaatgattcgacctgattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtc |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
43975989 |
ttatggatgggacaaatgattcaacctgattgggacatgtttcaatcagaccatatttgtgccaaatatcatgcaggttcaagagctatttgtggtggtc |
43976088 |
T |
|
| Q |
120 |
caatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacctgatggtacaatccccaaatgcatacattttcctct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||||| |||| |
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| T |
43976089 |
caatttatttgagtgataatgttggctctcatgactttgatttgattaagaagcttgtgttccctgatggtacaatccccagatgcacacattttgctct |
43976188 |
T |
|
| Q |
220 |
tcctactagagattgtcttttcaaaaattctctatttgacaaaacaactgttctcaaaatttggaatttcaataaggta |
298 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| ||||| |||||| |
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| T |
43976189 |
tccaactagagattgtcttttcaaaaaccctctatttgatcaaaaaactgttctcaaaatttggaacttcaacaaggta |
43976267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 36430854 - 36430576
Alignment:
| Q |
20 |
ttatggatgggacaaatgattcgacctgattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtc |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
36430854 |
ttatggatgggacaaatgattcaacctgattgggacatgttccaatcagaccatatttgtgccaaatttcatgcaggttcaagagctatctgtggtggtc |
36430755 |
T |
|
| Q |
120 |
caatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacctgatggtacaatccccaaatgcatacattttcctct |
219 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| || |||||||||||||| || || |||||||||||||| || |
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| T |
36430754 |
cagtttatttgagtgataatgttggctctcatgactttgatctgattaagaagcttgttttccctgatggtacaattcctaagtgcatacattttcccct |
36430655 |
T |
|
| Q |
220 |
tcctactagagattgtcttttcaaaaattctctatttgacaaaacaactgttctcaaaatttggaatttcaataaggta |
298 |
Q |
| |
|
||| || |||||||| |||||||| || ||||||||||| |||| |||| |||||||| ||||| ||||| |||||| |
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|
| T |
36430654 |
tccaacaagagattgccttttcaagaaccctctatttgaccaaacctctgtcctcaaaatctggaacttcaacaaggta |
36430576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 16225061 - 16224928
Alignment:
| Q |
38 |
attcgacctgattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgata |
137 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
16225061 |
attcaacctgattgggacatgttccaataagaccatatttgtgccaaatttcatgcaggttcaagagctatctgtggtggtccagtttatttgagtgata |
16224962 |
T |
|
| Q |
138 |
gtgttggctctcatgactttgatttgattaagaa |
171 |
Q |
| |
|
|||||||||||||| |||| || |||||||||| |
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|
| T |
16224961 |
atgttggctctcatgcctttaatctgattaagaa |
16224928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 43637872 - 43637824
Alignment:
| Q |
47 |
gattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctg |
95 |
Q |
| |
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||||||||||||||||||||| | |||| |||| || |||||||||||| |
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| T |
43637872 |
gattgggacatgttccaatctcatcatgcttgttctgaatttcatgctg |
43637824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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