View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_9 (Length: 452)
Name: NF19406_low_9
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_9 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: scaffold0215 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 121 - 437
Target Start/End: Original strand, 22500 - 22816
Alignment:
| Q |
121 |
ccttctttgcccaggtgaaccactcaatccgtgaagctttcgatttccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcac |
220 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22500 |
ccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcac |
22599 |
T |
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| Q |
221 |
ggttcccagaaccctgaaaatcccctttcttacttcttcgattctaccctcgaataatctcacacctcttccgaaaattctacgaatcctttgggaaatc |
320 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22600 |
ggttcccagaaccctgaaaataccctttcttacttcttcgattctaccctcgaataatctcacacctcttccgaaaattctacgaatcctttgggaaatc |
22699 |
T |
|
| Q |
321 |
tatgttgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcaacgacgacgtttgctgtgattgacgaacgtaccgga |
420 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22700 |
tatgctgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcgacgacgacgtttgctgtgattgacgaacgtaccgga |
22799 |
T |
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| Q |
421 |
tccacaaaggtatattt |
437 |
Q |
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||||||||||||||||| |
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| T |
22800 |
tccacaaaggtatattt |
22816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 121 - 437
Target Start/End: Complemental strand, 18851908 - 18851592
Alignment:
| Q |
121 |
ccttctttgcccaggtgaaccactcaatccgtgaagctttcgatttccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcac |
220 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
18851908 |
ccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttcttttgaaaatctccaaccatctttcac |
18851809 |
T |
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| Q |
221 |
ggttcccagaaccctgaaaatcccctttcttacttcttcgattctaccctcgaataatctcacacctcttccgaaaattctacgaatcctttgggaaatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18851808 |
ggttcccagaaccctgaaaatcccctttcttacttcttcgattctaccctcgaataatctcacacctcttccgaaaattctacgaatcctttgggaaatc |
18851709 |
T |
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| Q |
321 |
tatgttgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcaacgacgacgtttgctgtgattgacgaacgtaccgga |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
18851708 |
tatgttgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcgacgacgacgtttgctgtgattgacgaacgtaacgga |
18851609 |
T |
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| Q |
421 |
tccacaaaggtatattt |
437 |
Q |
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|||||||||| |||||| |
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| T |
18851608 |
tccacaaaggaatattt |
18851592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 124 - 437
Target Start/End: Original strand, 16352684 - 16352997
Alignment:
| Q |
124 |
tctttgcccaggtgaaccactcaatccgtgaagctttcgatttccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcacggt |
223 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16352684 |
tctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcacggt |
16352783 |
T |
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| Q |
224 |
tcccagaaccctgaaaatcccctttcttacttcttcgattctaccctcgaataatctcacacctcttccgaaaattctacgaatcctttgggaaatctat |
323 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||| |||||||| |
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| T |
16352784 |
tcccagaaccctgaaaatcccctttcttccttcttcgattctaccctcgaataatctcacacctcttcccaaaatgccacaaatcctttgagaaatctac |
16352883 |
T |
|
| Q |
324 |
gttgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcaacgacgacgtttgctgtgattgacgaacgtaccggatcc |
423 |
Q |
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| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
16352884 |
gctctttcgaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgtcgcggcgacgacgacgtttgctgtgattgacgaacgtaccggaccc |
16352983 |
T |
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| Q |
424 |
acaaaggtatattt |
437 |
Q |
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|||||||||||||| |
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| T |
16352984 |
acaaaggtatattt |
16352997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 18852011 - 18851958
Alignment:
| Q |
16 |
atgaaacaaaattttccccttccaattcaaataataacaaagaaacttcttgaa |
69 |
Q |
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| T |
18852011 |
atgaaacaaaattttccccttccagttcaaataataacaaagaaacttcttgaa |
18851958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 16352628 - 16352671
Alignment:
| Q |
17 |
tgaaacaaaattttccccttccaattcaaataataacaaagaaa |
60 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16352628 |
tgaaacaaaattttccccttccaattccaataataacaaagaaa |
16352671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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