View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19407_high_1 (Length: 611)
Name: NF19407_high_1
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 4e-92; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 133 - 332
Target Start/End: Original strand, 11453296 - 11453495
Alignment:
| Q |
133 |
tttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgtgaga |
232 |
Q |
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| T |
11453296 |
tttctctaatgaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtagtgaataccgttttataaggttaagattgtgaga |
11453395 |
T |
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| Q |
233 |
gaaattagggaaattgtggtgcaagattagagagataaattaagcttttggaatttgcggtaaattaatggtgatgcatagggcttgaattggagccaac |
332 |
Q |
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| T |
11453396 |
gaagttagggaaattgtggtgcaagattagagagataaattaaggttttggaatttgcggtaaattaatggtgatgcatagggtttgaattggagccaac |
11453495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 11381061 - 11381180
Alignment:
| Q |
129 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11381061 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11381160 |
T |
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| Q |
229 |
gagagaaattagggaaattg |
248 |
Q |
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| T |
11381161 |
gagagaaattagggaaattg |
11381180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 11404461 - 11404577
Alignment:
| Q |
129 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
228 |
Q |
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| T |
11404461 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11404560 |
T |
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| Q |
229 |
gagagaaattagggaaa |
245 |
Q |
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| T |
11404561 |
gagagaaattagggaaa |
11404577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 11396439 - 11396559
Alignment:
| Q |
129 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11396439 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11396538 |
T |
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| Q |
229 |
gagagaaattagggaaattgt |
249 |
Q |
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|||| || ||||||||||||| |
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| T |
11396539 |
gagaaaagttagggaaattgt |
11396559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 381 - 529
Target Start/End: Original strand, 11453682 - 11453819
Alignment:
| Q |
381 |
tgatcggtagacactttcataaaatggattattaatattaatgggataattataaa-gcaacgccaattctaatataaaaactaataacatgttaaatag |
479 |
Q |
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||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||| || |||||| |||||||| ||||||| |
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| T |
11453682 |
tgatcggtagatacttctataaaatggattattaatattactgggataattataaaagcaaggctaattctcatataaaagctaataaa----------- |
11453770 |
T |
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| Q |
480 |
tcatgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
529 |
Q |
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| T |
11453771 |
-catgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
11453819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 11396334 - 11396399
Alignment:
| Q |
22 |
cagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
87 |
Q |
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| T |
11396334 |
cagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagcca |
11396399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 11404356 - 11404421
Alignment:
| Q |
22 |
cagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
87 |
Q |
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| T |
11404356 |
cagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagcca |
11404421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 11380956 - 11381021
Alignment:
| Q |
22 |
cagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
87 |
Q |
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| T |
11380956 |
cagcggccatagccacgccaacaatgacaacaaagatgagcgcgagaacgaatacctttgaagcca |
11381021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 11453190 - 11453255
Alignment:
| Q |
22 |
cagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
87 |
Q |
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| T |
11453190 |
cagcggccatagcgacgccaacaacggcaacaaagatgagcgcgagaacgaataccttagaagcca |
11453255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 524 - 603
Target Start/End: Original strand, 11454081 - 11454161
Alignment:
| Q |
524 |
ttccaacttaaggcannnnnnnaaaaaattaccattaatcatgcaatttgattcaac-cacaaaccatctcaacctatgct |
603 |
Q |
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| T |
11454081 |
ttccaacttaaggcatttttaaaaaaaattaccattaatcatgcaatttgattcaacacacaaaccatctcaacctatgct |
11454161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 11453547 - 11453603
Alignment:
| Q |
333 |
caattttgtaaaaaattgcaaatcaataaggtatttagttgaccactttgatcggta |
389 |
Q |
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||||||||||||| ||||||||| | ||||| || ||||||| ||||||||||||| |
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| T |
11453547 |
caattttgtaaaatattgcaaattattaaggcatcgagttgacgactttgatcggta |
11453603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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