View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19407_high_11 (Length: 325)

Name: NF19407_high_11
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19407_high_11
NF19407_high_11
[»] chr4 (1 HSPs)
chr4 (13-309)||(3294306-3294601)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 3294306 - 3294601
Alignment:
Q  13 aaaataaaatatttgaacattattgtgatgcataaaagaaatttataaacatattttgcgaaaagacaaataaatataacatctaaaacattttgtgtat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3294306 aaaataaaatatttgaacattattgtgatgcataaaagaaatttataaacatattttgcgaaaagacaaataaatataacatctaaaacattt-gtgtat 3294404  T
Q  113 acacatatatagtgtattttagtaaattgatcgggaacaaggttttcgtgggacaggaatgaaccctatccaaaagatcacttagggagactttttcctc 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  3294405 acacatatatagtgtattttagtaaattgatcgggaacagggttttcgtgggacagggatgaaccctatccaaaagatcacttaggaagactttttcctc 3294504  T
Q  213 gtcgagttgnnnnnnntaccacctgcgaatctccaaatagagaattgtcgttgtaaggatcccttaactcaaatgcaaagtttaagttagtgtaaat 309  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3294505 gtcgagttgaaaaaaataccacctgcgaatctccaaatagagaattgtcgttgtaaggatcccttgactcaaatgcaaagtttaagttagtgtaaat 3294601  T

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