View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19407_high_14 (Length: 273)
Name: NF19407_high_14
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 385022 - 385114
Alignment:
| Q |
162 |
tgttgatgattttacgaaatagagagaaagctgacgagatgttaccaccttcgacacaatgagattgaaggaggattgtccaagtatcaatgt |
254 |
Q |
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| T |
385022 |
tgttgatgattttacgaaatagagagaaagctgatgagatgttaccaccttcgacacaatgagattgaaggaggattgtccaagtatgaatgt |
385114 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 34411668 - 34411751
Alignment:
| Q |
12 |
aattcttaaccataggagataacttaagattctatatgagattccaatgttcttccagcctatgttgcattgcatcattattag |
95 |
Q |
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| T |
34411668 |
aattcttaaccttaggaggtagcttaagatttcatacgagatcccaatgtcatgccaccgtatgttgcattgcatcattattag |
34411751 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 16308369 - 16308438
Alignment:
| Q |
17 |
ttaaccataggagataacttaagattctatatgagattccaatgttcttccagcctatgttgcattgcat |
86 |
Q |
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| T |
16308369 |
ttaaccttatgaggtagcttaagattccatatgagcttccaatgtcattccaccctatgttgcattgcat |
16308438 |
T |
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