View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19407_high_17 (Length: 214)
Name: NF19407_high_17
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 52643697 - 52643595
Alignment:
| Q |
18 |
aactcctccacatcctgcaatatcttctcccttagcagctccatccgtatttagccgaatccatcctaaactaggaggctgccaatgaatattttcaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52643697 |
aactcctccacatcctgcaatatcttctcccttagcagctccatccgtatttagccgaattcatcctaaactaggaggctgccaatgaatattttcaatc |
52643598 |
T |
|
| Q |
118 |
acc |
120 |
Q |
| |
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||| |
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| T |
52643597 |
acc |
52643595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 52643503 - 52643450
Alignment:
| Q |
143 |
gcatgataacattgttattggttgttacatcataaatttgtaaatttgtaccct |
196 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52643503 |
gcatgatagcattgttattggttgttgcatcataaatttgtaaatttgtaccct |
52643450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 31285339 - 31285440
Alignment:
| Q |
18 |
aactcctccacatcctgcaatatcttctcccttagcagctccatccgtatttagccgaatccatcctaaactaggaggctgccaatgaatattttcaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31285339 |
aactcctccacatcctgcaatatcttctcccttagcagctccatccgtatttagccgaattcatcctaaactaggaggctgccaatgaatattttcaatc |
31285438 |
T |
|
| Q |
118 |
ac |
119 |
Q |
| |
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|| |
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|
| T |
31285439 |
ac |
31285440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 36618557 - 36618455
Alignment:
| Q |
18 |
aactcctccacatcctgcaatatcttctcccttagcagctccatccgtatttagccgaatccatcctaaactaggaggctgccaatgaatattttcaatc |
117 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
36618557 |
aactcctccacatcctgcaataccttctcccttagatgctccatccatatttagcctaatccatcctaaactaggtggctgccaatggatattttcaatc |
36618458 |
T |
|
| Q |
118 |
acc |
120 |
Q |
| |
|
||| |
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|
| T |
36618457 |
acc |
36618455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 31287003 - 31287044
Alignment:
| Q |
143 |
gcatgataacattgttattggttgttacatcataaatttgta |
184 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
31287003 |
gcatgatagcattgttattggttgttacatcataaatttgta |
31287044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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