View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19407_high_4 (Length: 491)

Name: NF19407_high_4
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19407_high_4
NF19407_high_4
[»] chr5 (1 HSPs)
chr5 (7-233)||(33953342-33953572)
[»] scaffold0438 (5 HSPs)
scaffold0438 (234-417)||(12350-12537)
scaffold0438 (1-140)||(12645-12784)
scaffold0438 (280-417)||(9236-9373)
scaffold0438 (177-233)||(12591-12647)
scaffold0438 (419-463)||(6882-6927)
[»] chr8 (13 HSPs)
chr8 (234-417)||(26342189-26342376)
chr8 (234-417)||(26294858-26295045)
chr8 (234-417)||(26308115-26308302)
chr8 (1-140)||(26342484-26342623)
chr8 (1-137)||(26295156-26295292)
chr8 (1-137)||(26308413-26308549)
chr8 (177-233)||(26342430-26342486)
chr8 (178-233)||(26295099-26295154)
chr8 (178-233)||(26308356-26308411)
chr8 (248-363)||(8346921-8347036)
chr8 (422-463)||(26292500-26292542)
chr8 (422-463)||(26305757-26305799)
chr8 (422-463)||(26339112-26339154)
[»] chr3 (19 HSPs)
chr3 (236-354)||(1205737-1205855)
chr3 (234-330)||(1188678-1188774)
chr3 (234-299)||(1206321-1206386)
chr3 (234-363)||(5358764-5358891)
chr3 (349-416)||(8031884-8031951)
chr3 (109-178)||(147793-147862)
chr3 (234-304)||(147612-147683)
chr3 (113-178)||(1206484-1206549)
chr3 (109-178)||(24103552-24103621)
chr3 (4-104)||(8031714-8031812)
chr3 (7-112)||(24103420-24103525)
chr3 (289-354)||(1303311-1303376)
chr3 (290-354)||(1188107-1188171)
chr3 (109-176)||(1188884-1188952)
chr3 (32-113)||(742559-742637)
chr3 (32-113)||(752967-753045)
chr3 (269-330)||(1301246-1301307)
chr3 (52-112)||(7436010-7436068)
chr3 (387-417)||(5358917-5358947)
[»] chr2 (4 HSPs)
chr2 (47-114)||(43865743-43865808)
chr2 (114-161)||(43849635-43849682)
chr2 (21-114)||(43862197-43862287)
chr2 (70-114)||(43849563-43849607)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 33953342 - 33953572
Alignment:
Q  7 atccctctaagtcggatcggttacgtggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcg- 105  Q
    |||||||||||| || || ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33953342 atccctctaagttgggtcagttacatgaatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcga 33953441  T
Q  106 ---atactttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagttgtccaaagagtgcacgagctggt 202  Q
       |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33953442 tcgatactttgaaaaacttttgtatccttcaccatgttttttctgtagcccaacatcttgtattcacctatgcagttgtccaaagagtgcacgagctggt 33953541  T
Q  203 ttcaattgaaagaaattacacactgttaagt 233  Q
    |||||||||||||||||||||||||||||||    
T  33953542 ttcaattgaaagaaattacacactgttaagt 33953572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 234 - 417
Target Start/End: Complemental strand, 12537 - 12350
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 329  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12537 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaagga 12438  T
Q  330 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 417  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  12437 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 12350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 12784 - 12645
Alignment:
Q  1 ccacatatccctctaagtcggatcggttacgtggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12784 ccacatatccctctaagtcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 12685  T
Q  101 catcgatactttgaaaaacttctgtatccttcaccatgtt 140  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  12684 catccatactttgaaaaacttctgtatcgttcaccatgtt 12645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 280 - 417
Target Start/End: Complemental strand, 9373 - 9236
Alignment:
Q  280 aagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaattcaagagact 379  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  9373 aagaaaaaagaacgttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaagtcaaagcaataaaatctagagact 9274  T
Q  380 attctagaaaaatgcaaaggaattagacacaagattaa 417  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9273 attctagaaaaatgcaaaggaattatacacaagattaa 9236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 12647 - 12591
Alignment:
Q  177 gttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 233  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  12647 gttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 12591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 463
Target Start/End: Complemental strand, 6927 - 6882
Alignment:
Q  419 aagtgacttataacatgatc-atgtgggtttgtttactttacctct 463  Q
    |||||||||||||||||||  |||||||||||||||||||||||||    
T  6927 aagtgacttataacatgatgtatgtgggtttgtttactttacctct 6882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 234 - 417
Target Start/End: Complemental strand, 26342376 - 26342189
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 329  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26342376 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaagga 26342277  T
Q  330 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 417  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26342276 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26342189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 234 - 417
Target Start/End: Complemental strand, 26295045 - 26294858
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 329  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26295045 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaagga 26294946  T
Q  330 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 417  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26294945 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26294858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 234 - 417
Target Start/End: Complemental strand, 26308302 - 26308115
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaat----catgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaagga 329  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26308302 ctcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaagga 26308203  T
Q  330 ctacatctcacacaccaaacagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagattaa 417  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  26308202 ctacatctcacacaccaaacagaaagtcaaagcaataaaatctagagactattctagaaaaatgcaaaggaattatacacaagattaa 26308115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 26342623 - 26342484
Alignment:
Q  1 ccacatatccctctaagtcggatcggttacgtggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342623 ccacatatccctctaagtcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 26342524  T
Q  101 catcgatactttgaaaaacttctgtatccttcaccatgtt 140  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  26342523 catccatactttgaaaaacttctgtatcgttcaccatgtt 26342484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 26295292 - 26295156
Alignment:
Q  1 ccacatatccctctaagtcggatcggttacgtggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26295292 ccacatatccctctaagtcgggtcggttacgtggatcataagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 26295193  T
Q  101 catcgatactttgaaaaacttctgtatccttcaccat 137  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  26295192 catccatactttgaaaaacttcggtatccttcaccat 26295156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 26308549 - 26308413
Alignment:
Q  1 ccacatatccctctaagtcggatcggttacgtggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26308549 ccacatatccctctaagtcgggtcggttacgtggatcataagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatg 26308450  T
Q  101 catcgatactttgaaaaacttctgtatccttcaccat 137  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  26308449 catccatactttgaaaaacttcggtatccttcaccat 26308413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 26342486 - 26342430
Alignment:
Q  177 gttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 233  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26342486 gttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26342430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 26295154 - 26295099
Alignment:
Q  178 ttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 233  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26295154 ttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26295099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 26308411 - 26308356
Alignment:
Q  178 ttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 233  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26308411 ttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26308356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 8347036 - 8346921
Alignment:
Q  248 tcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaa 347  Q
    ||||||||| |||||||||||| |||||||| |||||||| ||||| ||||||    | ||  |||||||||||||||  ||| | ||||| ||||||||    
T  8347036 tcatttttattttaccagacaagtaaatcattaagaaaaaagaaagctaatccaacagtcagcatcttcaataatttagagacaatatctcgcacaccaa 8346937  T
Q  348 acagaaagtcaaagca 363  Q
    |||||||  |||||||    
T  8346936 acagaaaaccaaagca 8346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 26292542 - 26292500
Alignment:
Q  422 tgacttataacatgatc-atgtgggtttgtttactttacctct 463  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  26292542 tgacttataacatgatgtatgtgggtttgtttactttacctct 26292500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 26305799 - 26305757
Alignment:
Q  422 tgacttataacatgatc-atgtgggtttgtttactttacctct 463  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  26305799 tgacttataacatgatgtatgtgggtttgtttactttacctct 26305757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 26339154 - 26339112
Alignment:
Q  422 tgacttataacatgatc-atgtgggtttgtttactttacctct 463  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  26339154 tgacttataacatgatgtatgtgggtttgtttactttacctct 26339112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 236 - 354
Target Start/End: Complemental strand, 1205855 - 1205737
Alignment:
Q  236 caaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactacat 335  Q
    ||||||||||||| ||||||| || |||||||||||||||||| || ||| | |||| |||||||||  |||||||||| ||||||||||||| ||| ||    
T  1205855 caaacaagctgttgatttttatttaaccagacaaataaatcatcaataaataagaaatttaatccttcagacaatatctccaataatttaaggtctatat 1205756  T
Q  336 ctcacacaccaaacagaaa 354  Q
    |||||| ||||||||||||    
T  1205755 ctcacataccaaacagaaa 1205737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 1188774 - 1188678
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggac 330  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||  |||||| ||||||| | |||||||||    
T  1188774 ctcaaacgagctgttcatttttagtttaccagacaaataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaaaagtttaaggac 1188678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 1206386 - 1206321
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatc 299  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  1206386 ctcaaacaagttgttcatttttagtttaccagacaaataaatcatcaagaaaaaagaaagttaatc 1206321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 234 - 363
Target Start/End: Original strand, 5358764 - 5358891
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggactac 333  Q
    ||||||||||||| | ||||||| |||||||||||| |||||||| ||||| || ||||| ||||| ||  | ||| |||||||| ||||||| |||||     
T  5358764 ctcaaacaagctggtaattttta-tttaccagacaagtaaatcatcaagaacaaagaaagctaatcattcag-caacatcttcaacaatttaaagactat 5358861  T
Q  334 atctcacacaccaaacagaaagtcaaagca 363  Q
    ||||||||||||||||||||| ||||||||    
T  5358862 atctcacacaccaaacagaaaatcaaagca 5358891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 416
Target Start/End: Original strand, 8031884 - 8031951
Alignment:
Q  349 cagaaagtcaaagcaataaattcaagagactattctagaaaaatgcaaaggaattagacacaagatta 416  Q
    |||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8031884 cagacagtcaaagctataaattcacaagactattctagaaaaatgcaaaggaattagacacaagatta 8031951  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 147862 - 147793
Alignment:
Q  109 ctttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 178  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  147862 ctttgaataacttttgtatccttcaccatgttttttctgcaacccaacatcctgaattcacctatgcagt 147793  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 147683 - 147612
Alignment:
Q  234 ctcaaacaagctgttcatttttagtttaccagacaaataaatcatgaag-aaaaatgaaagttaatcctttt 304  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  147683 ctcaaacaagcttttcatttttagtttaccagacaaataaatcatcaagaaaaaaataaagttaatcctttt 147612  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 1206549 - 1206484
Alignment:
Q  113 gaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 178  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||    
T  1206549 gaaaaacttttgtatccttcaccatgttttttctgcaaccgaacatcatgtgttcacctatgcagt 1206484  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 24103552 - 24103621
Alignment:
Q  109 ctttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 178  Q
    ||||||||||||| ||||||||||||||||||||||||||| || |||| | ||| ||||||||||||||    
T  24103552 ctttgaaaaacttttgtatccttcaccatgttttttctgcaacctaacaacctgtgttcacctatgcagt 24103621  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 8031714 - 8031812
Alignment:
Q  4 catatccctctaagtcggatcggttacgtggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 103  Q
    ||||| ||| |||||||| ||||| || |||||||| ||||| ||||||||||||||| |||||  | || ||||||||||| ||||||||| |||||||    
T  8031714 catattcctttaagtcgggtcggtgacatggatcaaaagacatccataaataagtctaacaagt--aaaattaagcaaaagtattcttgtaacaatgcat 8031811  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 24103420 - 24103525
Alignment:
Q  7 atccctctaagtcggatcggttacgtggatcaacagacaccc---ataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 103  Q
    |||||||||||| ||||||||||| ||||||||  ||||||    |||| ||||||||||||| |||  |||||| |||||||||||||| |||||||||    
T  24103420 atccctctaagtgggatcggttacatggatcaaatgacaccttaaataagtaagtctagcaagaaga--aataaggaaaagtgttcttgttataatgcat 24103517  T
Q  104 cgatacttt 112  Q
     ||||||||    
T  24103518 -gatacttt 24103525  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 1303311 - 1303376
Alignment:
Q  289 gaaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 354  Q
    |||| |||||||||  |||||||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  1303311 gaaatttaatccttcagacaatatctccaataatttaaggtctatatctcacataccaaacagaaa 1303376  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 1188171 - 1188107
Alignment:
Q  290 aaagttaatccttttgacaatatcttcaataatttaaggactacatctcacacaccaaacagaaa 354  Q
    |||||||||||||  ||||| |||| ||||||| ||||| ||| |||||||||||||||||||||    
T  1188171 aaagttaatccttcagacaacatctccaataatataaggtctagatctcacacaccaaacagaaa 1188107  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 1188952 - 1188884
Alignment:
Q  109 ctttgaaaaacttctgtatccttcaccatgtt-ttttctgcagcccaacatcttgtattcacctatgca 176  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |  |||||| ||| ||||||||||||    
T  1188952 ctttgaaaaacttttgtatccttcaccatgtttttttctgcaactgaacatcctgtgttcacctatgca 1188884  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 742559 - 742637
Alignment:
Q  32 tggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttg 113  Q
    |||||||| ||||||| || |||||||||||| ||||||  ||| ||||||||||||||||| ||||| |||| ||||||||    
T  742559 tggatcaaaagacacc-atgaataagtctagcgagtaga--aatgagcaaaagtgttcttgttataatccatcaatactttg 742637  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 752967 - 753045
Alignment:
Q  32 tggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttg 113  Q
    |||||||| ||||||| || |||||||||||| ||||||  ||| ||||||||||||||||| ||||| |||| ||||||||    
T  752967 tggatcaaaagacacc-atgaataagtctagcgagtaga--aatgagcaaaagtgttcttgttataatccatcaatactttg 753045  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 1301246 - 1301307
Alignment:
Q  269 aataaatcatgaagaaaaatgaaagttaatccttttgacaatatcttcaataatttaaggac 330  Q
    |||||||||| |||||||| ||||||||||| ||  |||||| |||||||||| ||||||||    
T  1301246 aataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaataacttaaggac 1301307  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 7436010 - 7436068
Alignment:
Q  52 aataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatacttt 112  Q
    |||||||||||||||||||  ||| ||||||||||||||||| ||||| |||| |||||||    
T  7436010 aataagtctagcaagtaga--aatcagcaaaagtgttcttgttataatccatcaatacttt 7436068  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 5358917 - 5358947
Alignment:
Q  387 aaaaatgcaaaggaattagacacaagattaa 417  Q
    |||||||||||||||||||||||||||||||    
T  5358917 aaaaatgcaaaggaattagacacaagattaa 5358947  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 43865743 - 43865808
Alignment:
Q  47 ccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttga 114  Q
    |||| |||||||||||||||||||  ||| ||||||||||||||||| |||||||||| |||||||||    
T  43865743 ccatgaataagtctagcaagtaga--aatgagcaaaagtgttcttgttataatgcatccatactttga 43865808  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 43849635 - 43849682
Alignment:
Q  114 aaaaacttctgtatccttcaccatgttttttctgcagcccaacatctt 161  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  43849635 aaaaacttatgtatccttcaccatgttttttctgcaatccaacatctt 43849682  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 43862197 - 43862287
Alignment:
Q  21 gatcggttacgtggatcaacagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttga 114  Q
    ||||| |||| ||||||||  |||||| ||| |||||| | |||||||||  ||| ||||||||||||||||| |||||| ||| |||||||||    
T  43862197 gatcgattacatggatcaaacgacacctatatataagttt-gcaagtaga--aatgagcaaaagtgttcttgttataatggatcaatactttga 43862287  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 43849563 - 43849607
Alignment:
Q  70 agaaataagcaaaagtgttcttgtaataatgcatcgatactttga 114  Q
    |||||| ||||||||||||||||| |||||| ||| |||||||||    
T  43849563 agaaatgagcaaaagtgttcttgttataatgtatcaatactttga 43849607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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