View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19407_high_5 (Length: 435)
Name: NF19407_high_5
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 35354116 - 35354515
Alignment:
| Q |
14 |
gaatatatgtgaaagcgacagaatccaatatcgtatgattgatacacataagatagacacaaataagccctttcaaacaaaaataagctgtataacaaat |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| | |
|
|
| T |
35354116 |
gaatatatgcgaaagcgacagaatccaatatcttatgattgatacacataagatagaca----taagccctttcaaacaaaaataagttatataacaatt |
35354211 |
T |
|
| Q |
114 |
tttagagttatgatattgcagcnnnnnnnngaacaattctagatgaaaa-tttacttatctttcaactaaactttagattattaggatttctttccatta |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||| | |
|
|
| T |
35354212 |
tttagagttatgatattgcagcttttttttgaacaattctagataaaaaatttacttatctttcaattaaactttagattactaggatttctttccatca |
35354311 |
T |
|
| Q |
213 |
agaatcagagaataaacacacacaaaatacataaactacttaatatttctagagctttta-----cagaatgtgtttagctatttacaacattcggttta |
307 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35354312 |
agaatcggagaataaacacacacaaaatac---------ttaatatttctagagcttttatattacagaatgtgtttagctatttacaacattcggtttt |
35354402 |
T |
|
| Q |
308 |
ttctagaaatgaaggaaaatgtgagaaagcaagaagaaactaaccatctttggtgtttgacgatttccttgaatagatttctcatcaagcagaaagttga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354403 |
ttctagaaatgaaggaaaatgtgagaaagcaagaagaaactaaccatctttggtgtttgacgatttccttgaatagatttctcatcaagcagaaagttga |
35354502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University