View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19407_high_6 (Length: 433)
Name: NF19407_high_6
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_high_6 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 4543 - 4963
Alignment:
| Q |
1 |
cacagagggaataatatatatgtaactagagtaccaacttttcactacttatattctaatgttacttacaaattccactaacatcacgtagaaaatttat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4543 |
cacatagggaataatatatatgtaactagagtaccaacttttcactacttatattctaatgttacttacaaattccactaacatcacgtagaaaatttat |
4642 |
T |
|
| Q |
101 |
attgcaacacttgatcttcatggatgtattctttaagaggaggaaactctattagttgcattggattggacagtcacggttaccatgtaatatcacattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4643 |
attgcaacacttgatcttcatggatgtattctttaagaggaggaaactctattagttgcattggattggacagtcacggttaccatgtaatatcacattc |
4742 |
T |
|
| Q |
201 |
tagtttgaatcaagtttatgaggataaacctgcaaaaactcatcattaaaaacgatgcatctctttagagaaagaataaaactatttaactcaaattcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4743 |
tagtttgaatcaagtttatgaggataaacctgcaaaaactcatcattaaaaacgatgcatctctttagagaaagaataaaactatttaactcaaattcat |
4842 |
T |
|
| Q |
301 |
ccaaagaaacaacatttgaattatggttacctaattatttctttcctcactaaagctcatatatagttctgaccttcaactcccctctgttagtggttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4843 |
ccaaagaaacaacatttgaattatggttacctgattatttctttcctcactaaagctcatatatagttctgaccttcaactcccctctgttagtggttaa |
4942 |
T |
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| Q |
401 |
ctcatctaatatttcagcatt |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4943 |
ctcatctaatatttcagcatt |
4963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 4543 - 4963
Alignment:
| Q |
1 |
cacagagggaataatatatatgtaactagagtaccaacttttcactacttatattctaatgttacttacaaattccactaacatcacgtagaaaatttat |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4543 |
cacatagggaataatatatatgtaactagagtaccaacttttcactacttatattctaatgttacttacaaattccactaacatcacgtagaaaatttat |
4642 |
T |
|
| Q |
101 |
attgcaacacttgatcttcatggatgtattctttaagaggaggaaactctattagttgcattggattggacagtcacggttaccatgtaatatcacattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4643 |
attgcaacacttgatcttcatggatgtattctttaagaggaggaaactctattagttgcattggattggacagtcacggttaccatgtaatatcacattc |
4742 |
T |
|
| Q |
201 |
tagtttgaatcaagtttatgaggataaacctgcaaaaactcatcattaaaaacgatgcatctctttagagaaagaataaaactatttaactcaaattcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4743 |
tagtttgaatcaagtttatgaggataaacctgcaaaaactcatcattaaaaacgatgcatctctttagagaaagaataaaactatttaactcaaattcat |
4842 |
T |
|
| Q |
301 |
ccaaagaaacaacatttgaattatggttacctaattatttctttcctcactaaagctcatatatagttctgaccttcaactcccctctgttagtggttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4843 |
ccaaagaaacaacatttgaattatggttacctgattatttctttcctcactaaagctcatatatagttctgaccttcaactcccctctgttagtggttaa |
4942 |
T |
|
| Q |
401 |
ctcatctaatatttcagcatt |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4943 |
ctcatctaatatttcagcatt |
4963 |
T |
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