View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19407_low_2 (Length: 561)
Name: NF19407_low_2
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 56 - 546
Target Start/End: Complemental strand, 52536423 - 52535917
Alignment:
| Q |
56 |
atattctagtagttgaacaagaatgaaatttatatataactgattcagaacagaagaaatataacaaaattactctgtaagataagatgagaaaaagaga |
155 |
Q |
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| T |
52536423 |
atattctagtagttgaacaagaatgaaatttatatataactgattcagaacagaagaaatataacaaaattactctgtaagataagatgagaaaaagaga |
52536324 |
T |
|
| Q |
156 |
aaaactaattaatggttggggtaacttcc-tattctcgtgtcagctattccttattctcaattattattcgaccgg--gta------------aagaaat |
240 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
52536323 |
aaaactaattaatggttggggtaacttccctattctcgtgtcagctattccttattctcaattattattcgaccggccgtagagaaaaggaaaaagaaat |
52536224 |
T |
|
| Q |
241 |
aatgttagtggctatggtatattgtggaaataaaagttcgatcataccttgtctaattctttcctaattcgtaccaaaaatgattccaatgcacaatttg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52536223 |
aatgttagtggctatggtatattgtggaaataaaagttcgatcataccttgtctaattctttcctaattcgtaccaaaaatgattccaatgcacaatttg |
52536124 |
T |
|
| Q |
341 |
atatcaagcaatgatgtgattgtgatctttccattttgcaaagtgccagtccccccaccccatgcattgcttcttcataatatctccataacttatcgtc |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52536123 |
atatcaagcaatgatgtgattgtgatctttccattttgcaaagtgccagtccccccaccccatgcattgcttcttcataatatctccataacttatcgtc |
52536024 |
T |
|
| Q |
441 |
tctatctccaatatcattatcatacatctcatttttatatttgagcattaaaatgtaatatttatttagctttctttagaaaaataa-ataatcctcgtg |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |
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| T |
52536023 |
tctatctccaatatcattatcatacatctcatttttatatttgagcattaaaatgtaatatttatttagctttctttaaaaaaataatatagtcctcgtg |
52535924 |
T |
|
| Q |
540 |
agcttaa |
546 |
Q |
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| T |
52535923 |
agcttaa |
52535917 |
T |
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