View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19407_low_3 (Length: 492)
Name: NF19407_low_3
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 40646934 - 40646657
Alignment:
| Q |
16 |
gtaacattatccttcatcaaatggtgagatgctaagttgtgatcaaatttatgttaagaactcaaatgttatgtacctgaatttctgttctcaaacaacc |
115 |
Q |
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| T |
40646934 |
gtaacattatccttcatcaaatggtgagatgctaagttgtgatcaaatttatgttaagaactcaaatattatgtacctgaatttctgttctcaaacaacc |
40646835 |
T |
|
| Q |
116 |
atgtagagctaccactgtatacccgaattgacgaagaacagttccaacttttacatactgttgacgaggaaatttgtgacagtacctaaaatgccttggc |
215 |
Q |
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| T |
40646834 |
atgtagagctaccactgtatacccgaattgacgaagaacagttccaacttttacatactgttgacatggaaatttgtgacagtacctaaaatgccttggc |
40646735 |
T |
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| Q |
216 |
tcccaacttccatgtaatgcctgcacagttcaaaacaaaacgatttgaggagtaagtcattatttgaagcactggagc |
293 |
Q |
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| T |
40646734 |
tcccaacttccatgtaatgcctgcacagttcaaaacaaaacgatttgaggagtaagacattatttgaagcactggagc |
40646657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 344 - 485
Target Start/End: Complemental strand, 40646571 - 40646430
Alignment:
| Q |
344 |
atttaaagtggttgaatatggccacatatgtctgttttgtgattgtgtcttacacagacatgtatcggataccagacacctctttcatccaaagtgttga |
443 |
Q |
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| T |
40646571 |
atttaaagtggttgaatatggccacatatgtctgttttgtgattgtgtcggacacagacatgtatcggataccagacacctctttcatccaaagtgttga |
40646472 |
T |
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| Q |
444 |
tgctacacatacctggtgtagaaagttaggtgccctatgcta |
485 |
Q |
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| T |
40646471 |
tgctacacatacctggtgtagaaagttaggtgccctatgcta |
40646430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 40635060 - 40634865
Alignment:
| Q |
58 |
tcaaatttatgttaagaactcaaatgttatg-tacctgaatttctgttctcaaacaaccatgtagagctaccactgtatacccgaattgacgaagaacag |
156 |
Q |
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||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40635060 |
tcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacag |
40634961 |
T |
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| Q |
157 |
ttccaacttttacatactgttgacga-ggaaatttgtgacagtacctaaaatgccttggctcccaacttccatgtaatgcctgcacagttcaaaaca |
252 |
Q |
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| T |
40634960 |
ttccaacttttacatactgttg-cgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaaca |
40634865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 4780843 - 4781005
Alignment:
| Q |
89 |
tacctgaatttctgttctcaaacaaccatgtagagctaccactgtatacccgaattgacgaagaacagttccaacttttacatactgttgacgaggaaat |
188 |
Q |
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|||||||||||| | ||||||||| ||||| ||||||||||| || || || |||||||||||||||| ||||||||||||||| || || | |||||| |
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| T |
4780843 |
tacctgaatttcggatctcaaacagccatgcagagctaccacggtgtagccaaattgacgaagaacagctccaacttttacatattgctgccatggaaat |
4780942 |
T |
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| Q |
189 |
ttgtgacagtacctaaaatgccttggctcccaacttccatgtaatgcctgcacagttcaaaac |
251 |
Q |
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||||||||||||||| |||||||||||||||||||| |||| || ||||| || |||||||| |
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| T |
4780943 |
ttgtgacagtacctagaatgccttggctcccaacttgcatgcaacgcctggccaattcaaaac |
4781005 |
T |
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