View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19407_low_5 (Length: 481)
Name: NF19407_low_5
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19407_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 53285325 - 53285789
Alignment:
| Q |
1 |
ctataaaatttcttcgttatgtttgtaagtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53285325 |
ctataaaatttcttcgttatgtttgtaagtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttc |
53285424 |
T |
|
| Q |
101 |
catgcttgaaatttacgtcaaactatcatttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53285425 |
catgcttgaaatttacgtcaaactatcatttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgag |
53285524 |
T |
|
| Q |
201 |
atagagagtgatggtcctgctgtactgatgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgtt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53285525 |
atagagagtggtggtcctgctgtactgatgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgtt |
53285624 |
T |
|
| Q |
301 |
gtggtgtaaattggtaaataatttctgaagtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53285625 |
gtggtgtaaattggtaaataatttctgaagtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcattt |
53285724 |
T |
|
| Q |
401 |
ctctaggtcctggagatgcagtttattctgaaaattttgggtcatttgttcatcatactgctatt |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53285725 |
ctctaggtcctggagatgcagtttattctgaaaattttgggtcatttgttcatcatactgctatt |
53285789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 406
Target Start/End: Original strand, 54139122 - 54139490
Alignment:
| Q |
29 |
gtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttccatgcttgaaatttacgtcaaactatca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| | ||| | |||| |
|
|
| T |
54139122 |
gtttgtaactcatctgctggttgtttgattagaatgt---------ctatcacaggacccatcaatgtcttccatgcttgaaatttatgccaatccatca |
54139212 |
T |
|
| Q |
129 |
ttt-gaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgagatagagagtgatggtcctgctgtactg |
227 |
Q |
| |
|
|| ||||| || ||||||| || ||| ||||| || || |||||||||||||||||||||||||||||||| ||||| || ||||||||||||| || |
|
|
| T |
54139213 |
ttaagaagg-aagcgtaaacaggaaacggcacacttcaaccaagatccatgtttgaaacttattttagatgagacagagaatggtggtcctgctgtaatg |
54139311 |
T |
|
| Q |
228 |
atgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgttgtggtgtaaattggtaaataatttctg |
327 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54139312 |
atgaggtttaaatactaattttaaaatcatattttattgttttggcgtttccatattttcaccataaattgttctggtgtaaattggtaaataatttctg |
54139411 |
T |
|
| Q |
328 |
aagtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcatttctctag |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
54139412 |
aagtgattctttccatgcagatactggaatgatgagaaggttttgaaaatgtttggactggtcatgggcattcctctag |
54139490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 30 - 399
Target Start/End: Complemental strand, 52808925 - 52808551
Alignment:
| Q |
30 |
tttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttccatgcttgaaatttacgtcaaactatcat |
129 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||| || ||||| | |||||||||||||||||||||| ||| |||||||| ||||| | ||| |
|
|
| T |
52808925 |
tttgtaacacatctactggttgttagattagaatgtatctgttgtctgtcacaggacccatcaacgtcttccgtgcctgaaatttttgtcaatccgtcaa |
52808826 |
T |
|
| Q |
130 |
ttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgagatagagagtgatggtcctgctgtactgat |
229 |
Q |
| |
|
| ||||| | ||||||| | ||| ||||| | | | ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |||| |
|
|
| T |
52808825 |
ataaaggccagcgtaaacagagaatggcacacatacaaaaagatccatgtttgaaacttatattagatgagatagagaatggtggtcctgctgtaatgat |
52808726 |
T |
|
| Q |
230 |
gaggtttaaatac-----tatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgttgtggtgtaaattggtaaataattt |
324 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52808725 |
gaggtttaaatacctttttttttttttaatcatatttttttgttctggcatttccatatttccaccataaattgttgtggtgtaaattggataataattt |
52808626 |
T |
|
| Q |
325 |
ctgaagtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcatt |
399 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
52808625 |
ctgaagtgattatttccttgcagatactggaatgatgagaatattttgaagatgtttggactagccatgggcatt |
52808551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 421
Target Start/End: Original strand, 1923704 - 1923947
Alignment:
| Q |
170 |
agatccatgtttgaaacttattttagatgagatagagagtgatggtcctgctgtactgatgaggtttaaatactattttt---aaagtcatattttattg |
266 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| || |||||||||||| |||||||||||| |||| |||||| ||| ||||||||||| | |
|
|
| T |
1923704 |
agatccatctttgaaacatattttagatgagatagagaatggcggtcctgctgtaatgatgaggtttatataccatttttaaaaaattcatattttatgg |
1923803 |
T |
|
| Q |
267 |
ttttggcatttccatattttcaccataaattgttgtggtgtaaattggtaaataatttctgaagtgattctttccatgcagatactggaatgatgagagg |
366 |
Q |
| |
|
||| |||||||| ||||||| ||||| |||||||||| ||||| |||||||| ||||||| ||| |||||||||||||||||| | |
|
|
| T |
1923804 |
tttcggcatttc--------taccataatttgtt---atgtaaattggcaaatagtttctgaaaaaattcttttcatctagatactggaatgatgaggag |
1923892 |
T |
|
| Q |
367 |
gttttgaagatgtttggactagtcatgggcatttctctaggtcctggagatgcag |
421 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||| ||| | | |||||||||||| |
|
|
| T |
1923893 |
gttttgaagaagttgggactagccatgggcattcctccaacttctggagatgcag |
1923947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 1923574 - 1923645
Alignment:
| Q |
40 |
atctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttccatgcttgaaa |
111 |
Q |
| |
|
|||| ||| ||||| ||| |||||||||||| ||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
1923574 |
atctactgattgttagataagaatgtatatgctgtctatcacaggacccatcgatgtcttccatgcttgaaa |
1923645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 11844435 - 11843965
Alignment:
| Q |
1 |
ctataaaatttcttcgttatgtttgtaagtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11844435 |
ctataaaatttcttcgttatgtttgtaagtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctattacaggacccatcaacgtcttc |
11844336 |
T |
|
| Q |
101 |
catgcttgaaatttacgtcaaactatcatttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11844335 |
catgcttgaaatttacgtcaaactatcatttgaaggctttcgtaaactgggaatagcacaagttgacagagatccatgtttgaaacttattttagatgag |
11844236 |
T |
|
| Q |
201 |
atagagagtgatggtcctgctgtactgatgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgtt |
300 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11844235 |
atagagattggtggtcctgctgtactgatgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgtt |
11844136 |
T |
|
| Q |
301 |
gtggtgtaaattggtaaataatttctgaagtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcattt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11844135 |
gtggtgtaaattggtaaataatttctgaagtgattctttccatgcagatactggaatgatgagtgggttttgaagatgtttggactagtcatgggcattt |
11844036 |
T |
|
| Q |
401 |
ctctaggtc------ctggagatgcagtttattctgaaaattttgggtcatttgttcatcatactgctatt |
465 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11844035 |
ctctaggtccagactctggagatgcagtttatcatgaaaattctgggtcatttgttcatcatactgctatt |
11843965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 8e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 29 - 399
Target Start/End: Complemental strand, 23651439 - 23651071
Alignment:
| Q |
29 |
gtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttccatgcttgaaatttacgtcaaactatca |
128 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| |||| || || ||||||| |||||||||||||| |||||||||| | |||||||| | | | ||| |
|
|
| T |
23651439 |
gtttgtaacacttctgctggttgttagattaaaatgcatgtgctgtctatcacaggacccatcaatgtcttccatggtggaaatttataccgatccgtca |
23651340 |
T |
|
| Q |
129 |
tttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgagatagagagtgatggtcctgctgtactga |
228 |
Q |
| |
|
||||||| | |||||||| |||| ||||| | ||| ||||| |||||||||||||||||||||||||||||||| || |||||||| ||| ||| |
|
|
| T |
23651339 |
cttgaaggtcagcgtaaacgtagaacggcacacttgaacaaagatcaatgtttgaaacttattttagatgagatagagaatggtggtcctgaagtaatga |
23651240 |
T |
|
| Q |
229 |
tgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgttgtggtgtaaattggtaaataatttctga |
328 |
Q |
| |
|
||||||||||| || |||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23651239 |
tgaggtttaaacacaattttttaattc-tattttattgttttggcatttcc-tatttccaccataaattgttgtggtgtaaattggtaaataatttctga |
23651142 |
T |
|
| Q |
329 |
agtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcatt |
399 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23651141 |
agcgattctttccatgcagatactggaatgatgagaaggttttgaagatgtttggactagtcatgggcatt |
23651071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 29 - 399
Target Start/End: Complemental strand, 23736873 - 23736505
Alignment:
| Q |
29 |
gtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttccatgcttgaaatttacgtcaaactatca |
128 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| |||| || || ||||||| |||||||||||||| |||||||||| | |||||||| | | | ||| |
|
|
| T |
23736873 |
gtttgtaacacttctgctggttgttagattaaaatgcatgtgctgtctatcacaggacccatcaatgtcttccatggtggaaatttataccgatccgtca |
23736774 |
T |
|
| Q |
129 |
tttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgagatagagagtgatggtcctgctgtactga |
228 |
Q |
| |
|
|||||||| | |||||||| |||| ||||| | ||| ||||| |||||||||||||||||||||||||||||||| || |||||||| ||| ||| |
|
|
| T |
23736773 |
cttgaaggccagcgtaaacgtagaacggcacacttgaacaaagatcaatgtttgaaacttattttagatgagatagagaatggtggtcctgaagtaatga |
23736674 |
T |
|
| Q |
229 |
tgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgttgtggtgtaaattggtaaataatttctga |
328 |
Q |
| |
|
||||||||||| || |||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23736673 |
tgaggtttaaacacaattttttaattc-tattttattgttttggcatttcc-tatttccaccataaattgttgtggtgtaaattggtaaataatttctga |
23736576 |
T |
|
| Q |
329 |
agtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcatt |
399 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23736575 |
agcgattcattccatgcagatactggaatgatgagaaggttttgaagatgtttggactagtcatgggcatt |
23736505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 399
Target Start/End: Complemental strand, 23620094 - 23619726
Alignment:
| Q |
29 |
gtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttccatgcttgaaatttacgtcaaactatca |
128 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| |||| || || ||||||| |||||||||||||| |||||||||| | |||||||| | | | ||| |
|
|
| T |
23620094 |
gtttgtaacacttctgctggttgttagattaaaatgcatgtgctgtctatcacaggacccatcaatgtcttccatggtggaaatttataccgatccgtca |
23619995 |
T |
|
| Q |
129 |
tttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgagatagagagtgatggtcctgctgtactga |
228 |
Q |
| |
|
|||||||| | |||||||| |||| ||||| | ||| ||||| |||||||||||||||||||||||||||||||| || |||||||| ||| ||| |
|
|
| T |
23619994 |
cttgaaggccagcgtaaacgtagaacggcacacttgaacaaagatcaatgtttgaaacttattttagatgagatagagaatggtggtcctgaagtaatga |
23619895 |
T |
|
| Q |
229 |
tgaggtttaaatactatttttaaagtcatattttattgttttggcatttccatattttcaccataaattgttgtggtgtaaattggtaaataatttctga |
328 |
Q |
| |
|
||||||| ||| || |||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23619894 |
tgaggttgaaacacaattttttaattc-tattttattgttttggcatttcc-tatttccaccataaattgttgtggtgtaaattggtaaataatttctga |
23619797 |
T |
|
| Q |
329 |
agtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggactagtcatgggcatt |
399 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23619796 |
agcgattcattccatgcagatactggaatgatgagaaggttttgaagatgtttggactagtcatgggcatt |
23619726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 29 - 298
Target Start/End: Original strand, 23706864 - 23707134
Alignment:
| Q |
29 |
gtttgtaactcatctgctggttgtttgattagaatgtatatgatgtctatgacaggacccatcaacgtcttccatgcttgaaatttacgtcaaactatca |
128 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |||| || || ||||||| ||||||||| ||| |||||||||| | |||||||| | | | || |
|
|
| T |
23706864 |
gtttgtaacacatctgctggttgttagattaaaatgcatgtgctgtctatcacaggacccttcattgtcttccatggtggaaatttataccgatccgtcc |
23706963 |
T |
|
| Q |
129 |
tttgaaggcaaacgtaaacggggaacagcacaagtcgacagagatccatgtttgaaacttattttagatgagatagagagtgatggtcctgctgtactga |
228 |
Q |
| |
|
|||||||| | |||||||| |||| ||||| | ||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
|
|
| T |
23706964 |
cttgaaggccagcgtaaacgtagaacggcacacttgaacaaagatccatgtttgaaacttattttagatgagatagagaatggtggtcctgctgtaatga |
23707063 |
T |
|
| Q |
229 |
tgaggtttaaatacta--tttttaaagtcatattttattgttttggcatttccatattttcaccataaattg |
298 |
Q |
| |
|
||||||||||| || | |||||||| || ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23707064 |
tgaggtttaaacaccacttttttaaattc-tattttattgttttggcatttccatatttccaccataaattg |
23707134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 23707128 - 23707169
Alignment:
| Q |
307 |
taaattggtaaataatttctgaagtgattctttccatgcaga |
348 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
23707128 |
taaattggtaaataatttctgaagcgattctttccatacaga |
23707169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 48432258 - 48432186
Alignment:
| Q |
312 |
tggtaaataatttctgaagtgattctttccatgcagatactggaatgatgagagggttttgaagatgtttggac |
385 |
Q |
| |
|
||||| ||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
48432258 |
tggtagatagtttctgaa-tgatcctttccatgcagatactggaatgatgaggaggttttgaagaagttgggac |
48432186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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