View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19407_low_9 (Length: 401)

Name: NF19407_low_9
Description: NF19407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19407_low_9
NF19407_low_9
[»] chr3 (9 HSPs)
chr3 (11-385)||(36024267-36024642)
chr3 (125-385)||(36003170-36003430)
chr3 (185-385)||(23352574-23352774)
chr3 (185-385)||(23473077-23473277)
chr3 (185-385)||(23440548-23440748)
chr3 (189-384)||(23386910-23387105)
chr3 (183-264)||(23448048-23448129)
chr3 (185-376)||(23479225-23479416)
chr3 (185-264)||(23499816-23499895)
[»] chr4 (1 HSPs)
chr4 (19-385)||(12895970-12896337)
[»] scaffold0201 (1 HSPs)
scaffold0201 (185-385)||(12078-12278)
[»] chr2 (4 HSPs)
chr2 (185-221)||(16122558-16122594)
chr2 (119-162)||(16122608-16122651)
chr2 (119-162)||(16336549-16336592)
chr2 (185-221)||(16336606-16336642)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 36024642 - 36024267
Alignment:
Q  11 caaaggtgtacgtaatcaacttttttctaaattgtcggagcttcatcctgatgcacataatctagaaaccacaatttccatgagaagacttgcatgtaaa 110  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  36024642 caaaggtgtacgtaatcaacttttttctaaattgttggagcttcgtcccgatgcacctaatctagaaaccacaatttccatgagaagacttgtatgtaaa 36024543  T
Q  111 nnnnnnn-aattgtattggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtca 209  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36024542 aaaagtttaattgtattggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtca 36024443  T
Q  210 caactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatgaatctctcgaggtattctgtttgga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36024442 caactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatgaatctctcgaggtattctgtttgga 36024343  T
Q  310 ggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaat 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36024342 ggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattggctattgcggaggcaat 36024267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 125 - 385
Target Start/End: Complemental strand, 36003430 - 36003170
Alignment:
Q  125 ttggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtcacaactagagataagc 224  Q
    |||||||||||| |||||||||||||||  |||| ||||||||||| ||||| ||| || ||||| ||||||||| ||||||||||||||||||||||||    
T  36003430 ttggatgatgtgacaaccttagagcaagtggaaattcttaacatagataatatttgtttgggaccgggtagtagaatcattgtcacaactagagataagc 36003331  T
Q  225 aggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatgaatctctcgaggtattctgtttggaggctttcagagaaaa 324  Q
    || |||||| |||||||||| |||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36003330 agatatgtaaccaatttaatgaatgtgcaatatatgaggtcgagggattgaacgaagatgaatctcttgaggtattctgtttggaggctttcagagaaaa 36003231  T
Q  325 atatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaat 385  Q
    |||||| |||||||||||| | | |||||||||||||||||||| ||||||||||||||||    
T  36003230 atatccaaaaattgggtataggggtctatcaaaaagagcaattggctattgcggaggcaat 36003170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 385
Target Start/End: Complemental strand, 23352774 - 23352574
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatg 284  Q
    ||||| |||||||| |||||| | |||||||||||||| ||  ||| ||| || || | |||||||| |||||||||||| |||  ||||||||||  ||    
T  23352774 ggaccgggtagtagggtcattattacaactagagataaacatatatttagtcagttcagtaaatgtgaaatatatgaggttaaggaattgaacaaacgtg 23352675  T
Q  285 aatctctcgaggtattctgtttggaggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaa 384  Q
    | |||||  || |||||||||||   || |||||||||||  ||||||| ||||| |||| |||||||||| || | | ||||| |||||||  ||||||    
T  23352674 attctcttcagctattctgtttgtctgccttcagagaaaagcatcctaatattggatatgaagatctatcagaacgtgtaattgcctattgccaaggcaa 23352575  T
Q  385 t 385  Q
    |    
T  23352574 t 23352574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 385
Target Start/End: Complemental strand, 23473277 - 23473077
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatg 284  Q
    ||||| |||||||| |||||| | |||||||||||||||||  ||| ||| || || | ||||||||  ||||||||||||| |  |||||||||  |||    
T  23473277 ggaccgggtagtagggtcattatgacaactagagataagcacatatttagtcagttcagtaaatgtgagatatatgaggtcatgtaattgaacaatcatg 23473178  T
Q  285 aatctctcgaggtattctgtttggaggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaa 384  Q
    | |||||  || ||||| ||||| | || ||| ||| |||| | ||||||||||| |||| |||||||||| |||| | ||||| |||||||  ||||||    
T  23473177 attctcttcagctattcagtttgaatgccttcggaggaaaacagcctaaaattggatatgaagatctatcagaaagtgtaattgcctattgcaaaggcaa 23473078  T
Q  385 t 385  Q
    |    
T  23473077 t 23473077  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 385
Target Start/End: Complemental strand, 23440748 - 23440548
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatg 284  Q
    ||||| |||||||| |||||| | |||||||||||||||||  ||| ||| || || | ||||||||  |||||||||||||||  |||||||||  |||    
T  23440748 ggaccgggtagtagggtcattatgacaactagagataagcacatatttagtcagttcagtaaatgtgagatatatgaggtcaaggaattgaacaaccatg 23440649  T
Q  285 aatctctcgaggtattctgtttggaggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaa 384  Q
    | |||||  || || || ||||| | || ||| |||||||| |  |||||||||| | || |||||||||| |||| | ||||| |||||||  ||||||    
T  23440648 attctcttcagctactcagtttgaatgccttcggagaaaaacagtctaaaattggatgtgaagatctatcagaaagtgtaattgcctattgcaaaggcaa 23440549  T
Q  385 t 385  Q
    |    
T  23440548 t 23440548  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 384
Target Start/End: Complemental strand, 23387105 - 23386910
Alignment:
Q  189 caggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatgaatc 288  Q
    |||||||||| |||||| | |||||||||||||||||  ||   || || || | ||| |||| ||||||||| ||||||  |||||||||  |||| ||    
T  23387105 caggtagtagggtcattattacaactagagataagcacatactaagtcagttcagtaattgtgaaatatatgaagtcaaggaattgaacaaccatgattc 23387006  T
Q  289 tctcgaggtattctgtttggaggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaa 384  Q
    |||  || ||||| ||||| | || ||| |||||||| | ||||||||||| |||| |||| ||||| |||| | ||||| ||||||| |||||||    
T  23387005 tcttcagttattcagtttgaatgccttcggagaaaaacagcctaaaattggatatgaagatatatcagaaagtgtaattgcctattgcagaggcaa 23386910  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 23448129 - 23448048
Alignment:
Q  183 taggaccaggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggt 264  Q
    |||||||||||||||| |||||| | |||||||||||||||||| ||| ||| || || | |||||||| ||||||||||||    
T  23448129 taggaccaggtagtagggtcattattacaactagagataagcagatatttagtcagttgagtaaatgtgaaatatatgaggt 23448048  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 376
Target Start/End: Complemental strand, 23479416 - 23479225
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatg 284  Q
    |||||||||||||| |||||| | |||||||||||||||||  ||| ||| ||  | | |||||||| |||||||||| | ||   |||||||||  |||    
T  23479416 ggaccaggtagtagggtcattattacaactagagataagcacatatttagtcaggtgagtaaatgtgaaatatatgagcttaaagaattgaacaagcatg 23479317  T
Q  285 aatctctcgaggtattctgtttggaggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgc 376  Q
    | ||| |  || ||||| |||||   || |||| ||||||| | ||||||||||| |||| |||||||||| |||| | ||||| |||||||    
T  23479316 attcttttcagctattcagtttgactgccttcaaagaaaaacaacctaaaattggatatgaagatctatcagaaagtgtaattgcctattgc 23479225  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 23499895 - 23499816
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggt 264  Q
    |||||||||||||| |||||| | |||||||||||||||||  ||| ||| || || | |||||||| ||||||||||||    
T  23499895 ggaccaggtagtagggtcattattacaactagagataagcacatatttagtcagttgagtaaatgtgaaatatatgaggt 23499816  T

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Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 12895970 - 12896337
Alignment:
Q  19 tacgtaatcaacttttttctaaattgtcggagcttcatcctgatgcacataatctagaaaccacaatttccatgagaagacttgcatgt-aaannnnnnn 117  Q
    |||||||  |||||||||||| ||||| |||||||| || |||||||| | || |||||||| |||| | ||| ||||||||||||||| |||           
T  12895970 tacgtaacaaacttttttctacattgttggagcttcgtcttgatgcaccttatgtagaaaccccaatgttcataagaagacttgcatgtgaaaaaagttt 12896069  T
Q  118 aattgtattggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtcacaactaga 217  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||| || |||||||||||||| ||||||||||||    
T  12896070 cattgtattggatgatgtggcaaccttagagcaagcagaatatcttaacataggtaaaaattgtttaggccctggtagtagagtcatcgtcacaactaga 12896169  T
Q  218 gataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatgaatctctcgaggtattctgtttggaggctttca 317  Q
    ||||||||  |||| || |||||| || ||||||||||||| ||||||||| | ||||||| || ||| |||||  || ||||||||  | | || ||      
T  12896170 gataagcaaatatgcagtcaatttgatgaatgtgcaatatacgaggtcaagggtttgaacataggtgactctcttcagctattctgtaggaatgcctttg 12896269  T
Q  318 gagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaat 385  Q
    |||||||| ||||||||  ||| ||||  ||||||||||| || ||||||| ||||||  ||||||||    
T  12896270 gagaaaaacatcctaaagatggatatgaggatctatcaaagagtgcaattggctattgtagaggcaat 12896337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 385
Target Start/End: Complemental strand, 12278 - 12078
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagataagcaggtatgtagccaatttaataaatgtgcaatatatgaggtcaagagattgaacaaagatg 284  Q
    ||||| |||||||| |||||| | |||||||||||||| ||  ||| ||| || || | ||||||||  |||||||| ||||||  |||||||||  |||    
T  12278 ggaccgggtagtagggtcattattacaactagagataaacatatatttagtcagttcagtaaatgtgacatatatgaagtcaaggaattgaacaaccatg 12179  T
Q  285 aatctctcgaggtattctgtttggaggctttcagagaaaaatatcctaaaattgggtatggagatctatcaaaaagagcaattgactattgcggaggcaa 384  Q
    | |||||  || ||||| ||||| | || ||| |||||||| | ||||||||||| |||| |||||||||| |||| | ||||  |||||||  ||||||    
T  12178 attctcttcagttattcagtttgaatgccttcggagaaaaacagcctaaaattggatatgaagatctatcagaaagtgtaatttcctattgcaaaggcaa 12079  T
Q  385 t 385  Q
    |    
T  12078 t 12078  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 16122594 - 16122558
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagata 221  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16122594 ggaccaggtagtagagtcattgtcacaacaagagata 16122558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 16122651 - 16122608
Alignment:
Q  119 attgtattggatgatgtggcaaccttagagcaagcagaaaatct 162  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||    
T  16122651 attgtgttggacgatgttgcaaccttagagcaagcagaaaatct 16122608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 16336549 - 16336592
Alignment:
Q  119 attgtattggatgatgtggcaaccttagagcaagcagaaaatct 162  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||    
T  16336549 attgtgttggacgatgttgcaaccttagagcaagcagaaaatct 16336592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 16336606 - 16336642
Alignment:
Q  185 ggaccaggtagtagagtcattgtcacaactagagata 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  16336606 ggactaggtagtagagtcattgtcacaacaagagata 16336642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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