View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19408_high_4 (Length: 336)
Name: NF19408_high_4
Description: NF19408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19408_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 38568832 - 38569124
Alignment:
| Q |
22 |
catcatcatcatgtaactgaaaatttattctacaaattaaagaaaagtctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgat |
121 |
Q |
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| T |
38568832 |
catcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgat |
38568931 |
T |
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| Q |
122 |
atgcaggtgttcggacacgacactccctgatctaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtttta |
221 |
Q |
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| T |
38568932 |
atgcaggtgttcggacacgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtttta |
38569031 |
T |
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| Q |
222 |
tgttaccttggtcacttggtcaacaatgtcctcggtgttagttttgttactaccgaaactatgaatcatttgaccgaggagcactgtgatgat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38569032 |
tgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgat |
38569124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 38527615 - 38527695
Alignment:
| Q |
218 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagttttgttactaccgaaactatgaatcatttgaccga |
298 |
Q |
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|||||| |||||||| |||||| || |||| || ||||||| ||| ||||||||| ||||||| |||||||||||||| |
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| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccga |
38527695 |
T |
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