View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19408_low_1 (Length: 385)
Name: NF19408_low_1
Description: NF19408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19408_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 335
Target Start/End: Original strand, 34925565 - 34925897
Alignment:
| Q |
3 |
cagaccatgaaaatattaaaatattcaaaatttatatgaaccaattttgtactttacattctatatggttggaatttcaaattttacattgcttatcagc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34925565 |
cagaccatgaaaatattaaaatattcaaaatttatatgaaccaattttgtactttacattctatatggttggaatttcaaatttgacattgcttatcagc |
34925664 |
T |
|
| Q |
103 |
acacgcagaacattgcattaatataatccctcaacagtatacaagtgagaaggtcttataaagcgacacaatttattgaataaaatgcttaacttatgaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925665 |
acacgcagaacattgcattaatataatccctcaacagtatacaagtgagaaggtcttataaagcgacacaatttattgaataaaatgcttaacttatgaa |
34925764 |
T |
|
| Q |
203 |
ttatgatactaatgactttcctcattaagactatgaaactataaataaattgaatagagatagagttagcctgcgtactcagcttcagacatgaagctct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925765 |
ttatgatactaatgactttcctcattaagactatgaaactataaataaattgaatagagatagagttagcctgcgtactcagcttcagacatgaagctct |
34925864 |
T |
|
| Q |
303 |
gcatcaaggcacatacataagaagaaacaaatc |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
34925865 |
gcatcaaggcacatacataagaagaaacaaatc |
34925897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 335
Target Start/End: Original strand, 50376485 - 50376815
Alignment:
| Q |
3 |
cagaccatgaaaatattaaaatattcaaaatttatatgaaccaattttgtactttacattctatatggttggaatttcaaattttacattgcttatcagc |
102 |
Q |
| |
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|||||||||||||| | ||| ||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50376485 |
cagaccatgaaaatggtcaaaaatttaaaatatatacaaaccaattttgtaatttacattctatatggttggaatttcaaatttaacattgcttatcagc |
50376584 |
T |
|
| Q |
103 |
acacgcagaacattgcattaatataatccctcaacagtatacaagtgagaaggtcttataaagcgacacaatttattgaataaaatgcttaacttatgaa |
202 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
50376585 |
acacgcagaacagtgcattaatataatccctcaacagtatataagtgagaaggtcttataaagcgacacaatttattgaatgaaatgtttaacttatgaa |
50376684 |
T |
|
| Q |
203 |
ttatgatactaatgactttcctcattaagactatgaaactataaataaattgaatagagatagagttagcctgcgtactcagcttcagacatgaagctct |
302 |
Q |
| |
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||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |
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| T |
50376685 |
ttatgatacaaatgactttcttcaataagactatgaaactataaataaattgaatagatatcgagttagcctgc--cctcagcttcagacatgaagctct |
50376782 |
T |
|
| Q |
303 |
gcatcaaggcacatacataagaagaaacaaatc |
335 |
Q |
| |
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||||||||||||||| ||||||| |||||||| |
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| T |
50376783 |
gcatcaaggcacataaataagaaacaacaaatc |
50376815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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