View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_high_10 (Length: 449)
Name: NF19409_high_10
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 606129 - 606551
Alignment:
| Q |
18 |
acaggtagcggatcctgatatatatgagattatagaaaaagagaaaaagcgtcaattcaaagggattgaattgatagcttctgagaattttgtttgcagg |
117 |
Q |
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| T |
606129 |
acaggtagcggatcctgatatatatgagattatagaaaaagagaaaaagcgtcaattcaaagggattgaattgatagcttctgagaattttgtttgcagg |
606228 |
T |
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| Q |
118 |
gctgtaatggaagcgcttggaagccatttaacgaataaatactctgaaggaatgcctggtgcacgttactatggtggaaatcaatatatagatgaaattg |
217 |
Q |
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| T |
606229 |
gctgtaatggaagcgcttggaagccatttaacgaataaatactctgaaggaatgcctggtgcacgttactatggtggaaatcaatatatagatgaaattg |
606328 |
T |
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| Q |
218 |
aaacactttgttgcgagcgtgctttggctgcgtttaatcttgatcctaagtgttggggtgtgaatgtgcagccatattcgtgtacttcggctaattttgc |
317 |
Q |
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| T |
606329 |
aaacactttgttgcgagcgtgctttggctgcgtttaatcttgatcctaagtgttggggtgtgaatgtgcagccatattcgtgtacttcggctaattttgc |
606428 |
T |
|
| Q |
318 |
tgtgtatactggattgttggcgcccggggatcgaattatggggttggatactccttctggagggaatactagtcatggatattatactccgaatgggaag |
417 |
Q |
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| T |
606429 |
tgtgtatactggattgttggcgcccggggatcgaattatggggttggatactccttctggagggaatactagtcatggatattatactccgaatgggaag |
606528 |
T |
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| Q |
418 |
aaagtttctggggcttcaatatt |
440 |
Q |
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| T |
606529 |
aaagtttctggggcttcaatatt |
606551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 33130572 - 33130669
Alignment:
| Q |
76 |
aaagggattgaattgatagcttctgagaattttgtttgcagggctgtaatggaagcgcttggaagccatttaacgaataaatactctgaaggaatgcc |
173 |
Q |
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| T |
33130572 |
aaaggaattgaattaattgcttctgagaattttgtttgtagggctgtgatggaagcacttggtagtcatttgactaataagtattcagagggaatgcc |
33130669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 33130766 - 33130862
Alignment:
| Q |
270 |
ttggggtgtgaatgtgcagccatattcgtgtacttcggctaattttgctgtgtatactggattgttggcgcccggggatcgaattatggggttggat |
366 |
Q |
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| T |
33130766 |
ttggggtgttaatgttcagccttattcatgcacttcagctaattttgctgtttatactggtcttttgaatcctggggataggattatggggttggat |
33130862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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