View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_high_11 (Length: 430)

Name: NF19409_high_11
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_high_11
NF19409_high_11
[»] chr2 (7 HSPs)
chr2 (20-356)||(32164659-32164995)
chr2 (207-352)||(13284187-13284333)
chr2 (22-128)||(13284068-13284174)
chr2 (287-356)||(43822900-43822969)
chr2 (282-356)||(7497031-7497104)
chr2 (22-65)||(4580581-4580624)
chr2 (311-353)||(43317573-43317615)
[»] chr7 (17 HSPs)
chr7 (18-353)||(43079910-43080241)
chr7 (207-356)||(21809218-21809367)
chr7 (288-356)||(1076071-1076139)
chr7 (288-356)||(15234914-15234982)
chr7 (288-356)||(44945005-44945072)
chr7 (358-409)||(11200873-11200924)
chr7 (42-96)||(21809157-21809211)
chr7 (288-358)||(26942253-26942323)
chr7 (283-356)||(44970072-44970145)
chr7 (282-356)||(49017027-49017102)
chr7 (288-356)||(36723895-36723964)
chr7 (283-351)||(23328648-23328716)
chr7 (288-354)||(17756574-17756639)
chr7 (311-356)||(11907774-11907819)
chr7 (20-98)||(1075804-1075882)
chr7 (282-356)||(27400249-27400322)
chr7 (296-356)||(4038364-4038424)
[»] chr4 (12 HSPs)
chr4 (159-355)||(8823464-8823662)
chr4 (1-126)||(49083859-49083984)
chr4 (283-356)||(16204741-16204814)
chr4 (282-356)||(35187614-35187688)
chr4 (283-356)||(27993721-27993794)
chr4 (288-354)||(45071008-45071072)
chr4 (305-354)||(49084036-49084085)
chr4 (18-84)||(8823344-8823408)
chr4 (285-356)||(42841995-42842064)
chr4 (20-55)||(35187357-35187392)
chr4 (24-65)||(5232311-5232352)
chr4 (22-75)||(27993650-27993703)
[»] scaffold0097 (2 HSPs)
scaffold0097 (159-356)||(47457-47656)
scaffold0097 (18-199)||(47252-47433)
[»] chr5 (12 HSPs)
chr5 (159-357)||(14028167-14028371)
chr5 (288-356)||(4428886-4428954)
chr5 (288-356)||(17549151-17549219)
chr5 (288-356)||(31736901-31736968)
chr5 (288-356)||(37022969-37023037)
chr5 (305-356)||(33061830-33061881)
chr5 (22-88)||(14028048-14028114)
chr5 (288-350)||(37101824-37101886)
chr5 (18-108)||(16967119-16967209)
chr5 (283-356)||(20645838-20645909)
chr5 (283-331)||(28480715-28480763)
chr5 (283-350)||(4617157-4617224)
[»] chr6 (4 HSPs)
chr6 (283-357)||(29968704-29968778)
chr6 (288-356)||(3418991-3419059)
chr6 (288-356)||(19292934-19293002)
chr6 (283-358)||(10172508-10172584)
[»] scaffold0648 (1 HSPs)
scaffold0648 (282-356)||(4575-4649)
[»] scaffold0274 (1 HSPs)
scaffold0274 (282-356)||(4045-4119)
[»] scaffold0001 (1 HSPs)
scaffold0001 (288-356)||(181482-181550)
[»] chr3 (10 HSPs)
chr3 (282-356)||(8541098-8541172)
chr3 (282-356)||(47278334-47278407)
chr3 (288-357)||(42641927-42641996)
chr3 (288-356)||(25644578-25644646)
chr3 (313-356)||(27813513-27813556)
chr3 (288-348)||(38233170-38233229)
chr3 (288-326)||(47099852-47099890)
chr3 (20-98)||(47100081-47100159)
chr3 (312-356)||(18321815-18321859)
chr3 (160-204)||(43410269-43410312)
[»] chr1 (9 HSPs)
chr1 (283-356)||(25160636-25160708)
chr1 (288-356)||(36565778-36565846)
chr1 (288-354)||(4198205-4198270)
chr1 (286-352)||(43671424-43671489)
chr1 (287-356)||(46671518-46671587)
chr1 (311-356)||(3712509-3712554)
chr1 (312-356)||(16632323-16632367)
chr1 (21-91)||(25160481-25160551)
chr1 (25-65)||(49289933-49289973)
[»] scaffold0006 (1 HSPs)
scaffold0006 (288-356)||(230292-230359)
[»] chr8 (6 HSPs)
chr8 (282-356)||(33071734-33071808)
chr8 (282-356)||(37044969-37045043)
chr8 (288-356)||(7011316-7011383)
chr8 (306-353)||(19779875-19779921)
chr8 (23-65)||(19779742-19779784)
chr8 (282-327)||(19922494-19922539)
[»] scaffold0542 (1 HSPs)
scaffold0542 (22-70)||(9706-9754)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 20 - 356
Target Start/End: Original strand, 32164659 - 32164995
Alignment:
Q  20 tcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggtacgaatgcttggttggtacaag 119  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  32164659 tcgggggtgccaactatttatgaaatatatattaagcgttttcaaataatgtacaacatagtaaactggtgtagtggtacaaatgcttggttggtacaag 32164758  T
Q  120 gatgatgttaggttcaattaccactaggcccannnnnnngaataaaatatgaaaaattcgctaagaattattataaaggagggtgccg-agggatcgaac 218  Q
     | |||| | | || |||  |||||||| |||       |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||    
T  32164759 taggatgctggtttgaatc-ccactagggccaattttttgaataaaatatgaaaaattcgctaagaattattaaaaaggagggtgccggagggattgaac 32164857  T
Q  219 ttggaa-atgcaatgggttgagagaacacattaccactgcaacagaacatattaactgaattgatatgcctaatatgatatttatatcaaaactgggggg 317  Q
    | || | | |||||||||||||||||||||||||||||| |||||||||||||||||  |||  |||||||||||| ||||||||||||||||| |||||    
T  32164858 tcgggacacgcaatgggttgagagaacacattaccactgaaacagaacatattaacttgattattatgcctaatataatatttatatcaaaactcggggg 32164957  T
Q  318 tgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    | ||||||||||| ||||||||||||||||||| |||||    
T  32164958 tacagtggcacct-ggggtctccaaagagatccacccct 32164995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 207 - 352
Target Start/End: Original strand, 13284187 - 13284333
Alignment:
Q  207 gagggatcgaacttggaa-atgcaatgggttgagagaacacattaccactgcaacagaacatattaactgaattgatatgcctaatatgatatttatatc 305  Q
    ||||||||||||| || | | |||| ||||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  13284187 gagggatcgaactcgggacacgcaacgggttgagagaacgcaataccactgcaacagaacatattaactgaattattatgcctaatatgatatttatatc 13284286  T
Q  306 aaaactggggggtgcagtggcacctgggggtctccaaagagatccgc 352  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13284287 aaaactggtgggtgcagtggcacctgggggtctccaaagagatccgc 13284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 13284068 - 13284174
Alignment:
Q  22 gggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggtacgaatgcttggttggtacaagga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  13284068 gggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaactggtgtagtggtacaaatgcttggttggtataagga 13284167  T
Q  122 tgatgtt 128  Q
     ||||||    
T  13284168 ggatgtt 13284174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 43822900 - 43822969
Alignment:
Q  287 ctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||||||| ||||| |||  |||||||||||||||||||||||||||||  |||||||||||||||    
T  43822900 ctaatatgatatatatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccct 43822969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 7497104 - 7497031
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||||| ||   |||||||| ||||||||||| |||||||| ||||||||||||||||    
T  7497104 tatgcctaatatgatatttatataaatgttggggggtccagtggcacct-ggggtctctaaagagatccgcccct 7497031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 4580581 - 4580624
Alignment:
Q  22 gggggtgccaaatatttatgaaatatatattaaacgttttcaaa 65  Q
    ||||||||||||||| |||||||||||||||||| | |||||||    
T  4580581 gggggtgccaaatatatatgaaatatatattaaatggtttcaaa 4580624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 43317615 - 43317573
Alignment:
Q  311 tggggggtgcagtggcacctgggggtctccaaagagatccgcc 353  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||    
T  43317615 tggggggtgcaatggcacctgcgggtctccaaggagatccgcc 43317573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 43079910 - 43080241
Alignment:
Q  18 aatcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggtacgaatgcttggttggtaca 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||||| ||||||||     ||||    
T  43079910 aatcgagggtgccaaatatttatgaaatatatattaaacgtttttaaataatgtgcaacatagtaaactagtgtagtggtacaaatgcttg-----taca 43080004  T
Q  118 aggatgatgttaggttcaattaccactaggcccannnnnnngaataaaatatgaaaaattcgctaagaattattataaaggagggtgccg-agggatcga 216  Q
     ||| |||| | |||| || |  |||||||  ||       |||||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||    
T  43080005 tggaggatgct-ggtttaaatctcactagggtcatttttttgaataaaatatgaaaaattcgctaagaattattaaaaaggagagtaccggagggatcga 43080103  T
Q  217 acttggaa-atgcaatgggttgagagaacacattaccactgcaacagaacatattaactgaattgatatgcctaatatgatatttatatcaaaactgggg 315  Q
    ||| || | | |||||||||||||||||  |||||||||||||||| ||| |||||| |||||| |||||||||||||||||| |||||| |||||||||    
T  43080104 actcgggacacgcaatgggttgagagaatgcattaccactgcaacaaaacgtattaattgaattaatatgcctaatatgatatctatatccaaactgggg 43080203  T
Q  316 ggtgcagtggcacctgggggtctccaaagagatccgcc 353  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  43080204 ggtgcagtgacacctgagggtctccaaagagatccgcc 43080241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 207 - 356
Target Start/End: Original strand, 21809218 - 21809367
Alignment:
Q  207 gagggatcgaacttggaa-atgcaatgggttgagagaacacattaccactgcaacagaacatattaactgaattgatatgcctaatatgatatttatatc 305  Q
    ||||||||||||| || | | ||||||| |||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  21809218 gagggatcgaactcgggatacgcaatggattgagagaacgcattaccactgcaacagaacgtattaactgaattaatatgcctaatatgatatttatatc 21809317  T
Q  306 aaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  21809318 aaaact-gggggtgcagtggcacctgaggatctccaaagagatccgcccct 21809367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 1076071 - 1076139
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1076071 taatatgaaatttatataaaaactggggggtgcagtggcatctgggggtctccaaagagatccgcccct 1076139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 15234914 - 15234982
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  15234914 taatatgaaatttatataaaaacttgggggtgcagaggcacctgggggtctccaaagagatccgcccct 15234982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 44945072 - 44945005
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  44945072 taatatgaaatttatataaaaactggggg-tggagtggcacctgggggtctccaaagagatccgcccct 44945005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 11200873 - 11200924
Alignment:
Q  358 cctttcggtaaaggtttaattgagtccaagtataatcatttcatggtctgta 409  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11200873 cctttaggtaaaggtttaattgagtccaagtataatcatttcatggtctgta 11200924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 21809157 - 21809211
Alignment:
Q  42 aaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtgg 96  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21809157 aaatatttattaaacgttttcaaataatgtacaacatagtaaactggtgtagtgg 21809211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 26942323 - 26942253
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccctac 358  Q
    |||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  26942323 taatatgaaatttatatgcaaactgggaggtgcagtggcacctgggggtctccaaagagatctacccctac 26942253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 44970145 - 44970072
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  44970145 atgcataatatgaaatttatatataaactggggggtgcagtggcacctgggagtctctgaagagatccgcccct 44970072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 49017027 - 49017102
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactgggg-ggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||| |||||||| ||||||||| ||  |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  49017027 tatggctaatatgctatttatataaatgctgggggggtgcagtggcacctgggggtctctaaagagatccgcccct 49017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 36723964 - 36723895
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgca-gtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||||||||| | | |||||| ||||||||||||||||||||||||||||    
T  36723964 taatatgaaatttatataaaaactgggggggggaagtggcatctgggggtctccaaagagatccgcccct 36723895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 23328716 - 23328648
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccg 351  Q
    ||||||||||||| |||| ||| ||  ||| |||||||||||||||||||||||||| |||||||||||    
T  23328716 atgcctaatatgacatttgtataaaggctgaggggtgcagtggcacctgggggtctctaaagagatccg 23328648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 17756639 - 17756574
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgccc 354  Q
    |||||||| |||||||| |||| ||| || ||||||||||||| || ||||||||||||||||||||    
T  17756639 taatatgaaatttatataaaaattggagg-tgcagtggcaccttggagtctccaaagagatccgccc 17756574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 11907774 - 11907819
Alignment:
Q  311 tggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  11907774 tggggggtgcagtggcacctgggagtctctgaagagatccgcccct 11907819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 1075804 - 1075882
Alignment:
Q  20 tcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggta 98  Q
    ||||||||||||||||||||  |||||||||||||||   ||||||  |||| |||||| || || |||||| ||||||    
T  1075804 tcgggggtgccaaatatttaaaaaatatatattaaacagattcaaaagatgtgcaacattgttaactggtgtggtggta 1075882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 27400322 - 27400249
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||| |||||||| ||||||||| |||  | |||||||||||| ||||||||||||||  |||||||||| ||||    
T  27400322 tatggctaatatgctatttatat-aaatgttgggggtgcagtgacacctgggggtctctgaagagatccgtccct 27400249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 4038424 - 4038364
Alignment:
Q  296 tatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||| |||  ||| |||||||||||||| || ||||||| | ||||||||||||||    
T  4038424 tatttatataaaatttggtgggtgcagtggcacatgtgggtctctacagagatccgcccct 4038364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 159 - 355
Target Start/End: Original strand, 8823464 - 8823662
Alignment:
Q  159 gaataaaatatgaaaaattcgctaagaattattataaaggagggtgccg-agggatcgaacttggaa-atgcaatgggttgagagaacacattaccactg 256  Q
    |||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||| || | | |||||||||||||||||| |||||||||||    
T  8823464 gaataaaatatgaaaaattcgctaagaaatattaaaaaggaaggtgccggagggatcgaactcgggacacgcaatgggttgagagaacgcattaccactg 8823563  T
Q  257 caacagaacatattaactgaattgatatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccc 355  Q
    ||||||||  |||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  8823564 caacagaatgtattaactaaaccaatatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgagggtctctaaagagatccgcccc 8823662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 49083859 - 49083984
Alignment:
Q  1 cggatgtcgaagaatataatcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggtacg 100  Q
    ||||||| ||| || | |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||      
T  49083859 cggatgttgaaaaaaaaaatcggggatgccaaatatttatgaaatatatattaaacgttttcaaataatattcaacatagtaaaatggtgtagtagtata 49083958  T
Q  101 aatgcttggttggtacaaggatgatg 126  Q
    |||| |||||||||||||||| ||||    
T  49083959 aatgtttggttggtacaaggaggatg 49083984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 16204814 - 16204741
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||| ||||||||||||||||| ||   ||||||||||||||||||||||||||||| ||||||||||||||||    
T  16204814 atgcataatatgatatttatataaacgttggggggtgcagtggcacctgggggtctctaaagagatccgcccct 16204741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 35187614 - 35187688
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||||| ||    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  35187614 tatgcctaatatgatatttatataaatgtcggggggtgcagtggcatctgggggtctctaaagagatccgcccct 35187688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 27993721 - 27993794
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||||||||||||||||| |||  |||||||||||||| ||| | |||||||| ||||||||||||||||    
T  27993721 atgcctaatatgatatttatataaaagttggggggtgcagtgacactttggggtctctaaagagatccgcccct 27993794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 45071072 - 45071008
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgccc 354  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  45071072 taatatgaaatttatataaaaac-ggggggtgcagtggcacctgggg-tctccaaagagatccgccc 45071008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 49084036 - 49084085
Alignment:
Q  305 caaaactggggggtgcagtggcacctgggggtctccaaagagatccgccc 354  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  49084036 caaaactggagggtgcagtggcacttgggggtctccaaagagatccgccc 49084085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 8823344 - 8823408
Alignment:
Q  18 aatcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaa 84  Q
    |||| ||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||| ||||    
T  8823344 aatctggggtgccaaatatttatgaagtata--ttaaacgttttcaaataaagtacaacataataaa 8823408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 42841995 - 42842064
Alignment:
Q  285 gcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||||||||||||||| ||| ||||||  ||||||||||| || ||||||| ||||||||||| ||||    
T  42841995 gcctaatatgatatttatataaaagctgggg--tgcagtggcacttgcgggtctctaaagagatccgtccct 42842064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 35187357 - 35187392
Alignment:
Q  20 tcgggggtgccaaatatttatgaaatatatattaaa 55  Q
    |||||||||||||||||||||| |||||||||||||    
T  35187357 tcgggggtgccaaatatttatggaatatatattaaa 35187392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 5232311 - 5232352
Alignment:
Q  24 gggtgccaaatatttatgaaatatatattaaacgttttcaaa 65  Q
    |||||||||||||||||| ||||||||||||||  |||||||    
T  5232311 gggtgccaaatatttatggaatatatattaaacagtttcaaa 5232352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 27993650 - 27993703
Alignment:
Q  22 gggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaa 75  Q
    ||||||||||||||||| || |||||||||||||   ||||||||||| |||||    
T  27993650 gggggtgccaaatatttgtggaatatatattaaaacgtttcaaataatatacaa 27993703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 159 - 356
Target Start/End: Original strand, 47457 - 47656
Alignment:
Q  159 gaataaaatatgaaaaattcgctaagaattattataaaggagggtgccg-agggatcgaacttggaa-atgcaatgggttgagagaacacattaccactg 256  Q
    |||||||| |||||||||||| |||||||||||| |||||||| ||||| |||||||||||| | || | ||||| |||||||||||| |||||||||||    
T  47457 gaataaaaaatgaaaaattcgttaagaattattaaaaaggaggctgccggagggatcgaactcgaaacacgcaataggttgagagaacgcattaccactg 47556  T
Q  257 caacagaacatattaactgaattgatatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||    
T  47557 caacagaacatattatctgtattaatatgcctaatacgatatttatatcaaaactgaggggtgcagtggcacctagaggtctccaaagagatccgcccct 47656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 47252 - 47433
Alignment:
Q  18 aatcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggtacgaatgcttggttggtaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||| |||||    
T  47252 aatcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaccatagtaaactagtgtagtggtacaaatgcttggttagtaca 47351  T
Q  118 aggatgatgttaggttcaattaccactaggccca-nnnnnnngaataaaatatgaaaaattcgctaagaattattataaagga 199  Q
    |||| |||| | ||||||| | |||||||| |||        |||||||| ||||||||||||||||||||||||| ||||||    
T  47352 aggaggatgct-ggttcaactcccactagggccattttttttgaataaaaaatgaaaaattcgctaagaattattaaaaagga 47433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 159 - 357
Target Start/End: Original strand, 14028167 - 14028371
Alignment:
Q  159 gaataaaatatgaaaaattcgctaagaattattataaaggagggtgcc-gagggatcgaacttggaa-atgcaatgggttgagagaacacatt----acc 252  Q
    |||||||||||||||||||| ||||||||||||| |||  |||||| | |||||||| |||| || | ||  ||||| |||||||||| |||     |||    
T  14028167 gaataaaatatgaaaaattcactaagaattattaaaaaatagggtgtcagagggatcaaactcgggacataaaatggattgagagaacgcatatataacc 14028266  T
Q  253 actgcaacagaacatattaactgaattgat-atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccg 351  Q
    | ||||||| || |||||| || ||   || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  14028267 aatgcaacacaatatatta-cttaacctatcatgcctaatatgatatttatattaaaactggggggtgcagttgcacctgggggtctccaaagagatccg 14028365  T
Q  352 ccccta 357  Q
    ||||||    
T  14028366 ccccta 14028371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 4428886 - 4428954
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  4428886 taatatgaaatttatataaaatctggggggtgcagtggcacctaggggtctccaaagagatccgcccct 4428954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 17549219 - 17549151
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  17549219 taatatgaaatttatataaaaacttgggggtgcagaggcacctgggggtctccaaagagatccgcccct 17549151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 31736901 - 31736968
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  31736901 taatatgaaatttatataaaaactgggg-gtgcagtggcacctgggggtctccaaagagattcgcccct 31736968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 37022969 - 37023037
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||| ||||||||| ||   |||||||||||||||||||||||||||||  |||||||||||||||    
T  37022969 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccct 37023037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 33061881 - 33061830
Alignment:
Q  305 caaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  33061881 caaaactggggggtgcagtggcacctaggggtctccacagagatccgtccct 33061830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 14028048 - 14028114
Alignment:
Q  22 gggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattgg 88  Q
    ||||||| |||||||||||||| ||||||||||||| |||| || ||| ||||| ||||||||||||    
T  14028048 gggggtgtcaaatatttatgaattatatattaaacggtttccaagaatatacaatatagtaaattgg 14028114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 37101824 - 37101886
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatcc 350  Q
    |||||||| |||||||| |||| | |||||||||||||||||||  |||||||||||||||||    
T  37101824 taatatgaaatttatataaaaattagggggtgcagtggcacctgcaggtctccaaagagatcc 37101886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 16967119 - 16967209
Alignment:
Q  18 aatcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggtacgaatgcttg 108  Q
    |||||| |||||||||||||| |  ||||||||||||||| ||||||| ||| || |  |||||||| ||||||||| |||| | ||||||    
T  16967119 aatcggaggtgccaaatatttgttgaatatatattaaacggtttcaaaaaatatatagtatagtaaactggtgtagtcgtacaattgcttg 16967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 20645838 - 20645909
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||| |||||||||| ||  ||||||  |||||||||||| ||||||||| |||||||| |||||||    
T  20645838 atgcctaatatcatatttatataaaggctgggg--tgcagtggcaccagggggtctctaaagagattcgcccct 20645909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 28480715 - 28480763
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctg 331  Q
    |||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  28480715 atgcctaatatgatatttatataaaagttgggaggtgcagtggcacctg 28480763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 4617157 - 4617224
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatcc 350  Q
    |||||||||||| ||||||||| ||| || || |||||| || |||||| ||||||| ||||||||||    
T  4617157 atgcctaatatgctatttatataaaagctcggaggtgcattgacacctgagggtctctaaagagatcc 4617224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 29968704 - 29968778
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgccccta 357  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||    
T  29968704 atgcctaatatgatatttatataaaagttggggggtgcagtggcacctgggggtctctaaagagatccgccccta 29968778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 3419059 - 3418991
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3419059 taatatgaaatttatataaaaactggggggtgcagtggcatctgggggtctccaaagagatccgcccct 3418991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 19292934 - 19293002
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||| ||||||||| ||   |||||||||||||||||||||||||||||  |||||||||||||||    
T  19292934 taatatgctatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccct 19293002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 10172584 - 10172508
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctggg-ggtctccaaagagatccgcccctac 358  Q
    |||| |||||| | ||||||||  ||| ||| ||||||||||||||||||| ||||||  ||||||| |||||||||    
T  10172584 atgcataatataaaatttatatataaattggagggtgcagtggcacctgggaggtctctgaagagattcgcccctac 10172508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 4575 - 4649
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4575 tatgcctaatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccct 4649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 4045 - 4119
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4045 tatgcctaatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccct 4119  T

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Target: scaffold0001 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 181550 - 181482
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  181550 taatatgaaatttatattaaaactagggggtgcagtggcatctgggggtctccaaagagatccgcccct 181482  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 8541172 - 8541098
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||| |||||||||||||||||| ||   ||||||||||||||||||||||||||||| ||||||||||||||||    
T  8541172 tatgactaatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccct 8541098  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 47278334 - 47278407
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  47278334 tatgcctaatatgatatttatataaatattgggg-gtgcagtggcacctgggggtctctaaagagatccgcccct 47278407  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 42641927 - 42641996
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgccccta 357  Q
    |||||| | |||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  42641927 taatataaaatttatataaaacctcgggggtgcagtggcacctgggggtctccaaagagatccgccccta 42641996  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 25644646 - 25644578
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||||||||||||| ||||| ||| ||||||||||||||||| ||||||    
T  25644646 taatatgaaatttatattaaaactggggggtgcaatggcatctgagggtctccaaagagatctgcccct 25644578  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 27813556 - 27813513
Alignment:
Q  313 gggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  27813556 gggggtgcagtggcacctgggggtctctaaagagatccgcccct 27813513  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 38233170 - 38233229
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagat 348  Q
    |||||||| ||||||||  |||||||| | |||||||||||||||||||||||||||||||    
T  38233170 taatatgaaatttatatttaaactgggag-tgcagtggcacctgggggtctccaaagagat 38233229  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 47099890 - 47099852
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggc 326  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  47099890 taatatgaaatttatataaaaactggggggtgcagtggc 47099852  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 47100159 - 47100081
Alignment:
Q  20 tcgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgtagtggta 98  Q
    ||||||||||||||||||||  |||||||||||||||   ||||||  |||| |||||| || || |||||| ||||||    
T  47100159 tcgggggtgccaaatatttaaaaaatatatattaaacagattcaaaagatgtgcaacattgttaactggtgtggtggta 47100081  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 18321859 - 18321815
Alignment:
Q  312 ggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||  |||||||||||||||||| | ||||||||||||||    
T  18321859 ggggggtgtcgtggcacctgggggtctcaatagagatccgcccct 18321815  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 43410312 - 43410269
Alignment:
Q  160 aataaaatatgaaaaattcgctaagaattattataaaggagggtg 204  Q
    ||||||||| |||||||||||||||||||| || |||||||||||    
T  43410312 aataaaataagaaaaattcgctaagaatta-taaaaaggagggtg 43410269  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 25160636 - 25160708
Alignment:
Q  283 atgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| ||||||||||||||||    
T  25160636 atgcctaatatgatatttatat-aaaagtcgggggtgcagtggcacctaggggtctctaaagagatccgcccct 25160708  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 36565778 - 36565846
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  36565778 taatatgaaatttatataaaatctggggggtgcagtggcacctggggatcttcaaagagatccgcccct 36565846  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 4198270 - 4198205
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgccc 354  Q
    |||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  4198270 taatatgaaatttatataaaacctggggggtgcagtggcacct-ggggtctccaaagagatccgccc 4198205  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 43671424 - 43671489
Alignment:
Q  286 cctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgc 352  Q
    ||||||||||||||||||| |||  | ||||||||||||||||||||||||||| ||||||||||||    
T  43671424 cctaatatgatatttatat-aaaggttgggggtgcagtggcacctgggggtctctaaagagatccgc 43671489  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 46671518 - 46671587
Alignment:
Q  287 ctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| ||| ||||| |||  |||||||||||||||||||||||||||||  |||||||||||||||    
T  46671518 ctaatatgttatatatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccct 46671587  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 3712554 - 3712509
Alignment:
Q  311 tggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  3712554 tggggggtgcagtggcacctgtgggtctccaaggagatccgcccct 3712509  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 16632323 - 16632367
Alignment:
Q  312 ggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  16632323 ggggggtgcagtggcacctgggggtctctaaagagatctgcccct 16632367  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 25160481 - 25160551
Alignment:
Q  21 cgggggtgccaaatatttatgaaatatatattaaacgttttcaaataatgtacaacatagtaaattggtgt 91  Q
    |||||||||||||||||| || |||||||||||||   ||||||| ||| ||||| || ||||||||||||    
T  25160481 cgggggtgccaaatatttgtggaatatatattaaaacatttcaaacaatatacaatattgtaaattggtgt 25160551  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 49289973 - 49289933
Alignment:
Q  25 ggtgccaaatatttatgaaatatatattaaacgttttcaaa 65  Q
    |||||||||||| |||||||||||||||||| | |||||||    
T  49289973 ggtgccaaatatatatgaaatatatattaaatggtttcaaa 49289933  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 230359 - 230292
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    ||||||| ||||||||| |||  | |||||||||||| |||||||||||||| ||||||||||||||||    
T  230359 taatatgctatttatat-aaatgttgggggtgcagtgacacctgggggtctctaaagagatccgcccct 230292  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 33071734 - 33071808
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||||||| |||| |||| ||| | |||||| |||  ||||||||||||||||| | ||||||||||||||    
T  33071734 tatgcctaatatcatatatataacaatattgggggatgccatggcacctgggggtctcaacagagatccgcccct 33071808  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 37045043 - 37044969
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||| |||||||| ||||||||| ||   ||||||||||||||||||||||||||||   ||||||| |||||||    
T  37045043 tatggctaatatgctatttatataaatgttggggggtgcagtggcacctgggggtctatgaagagattcgcccct 37044969  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 7011383 - 7011316
Alignment:
Q  288 taatatgatatttatatcaaaactggggggtgcagtggcacctgggggtctccaaagagatccgcccct 356  Q
    |||||||| |||||||| |||||| |||  || ||||||| || |||||||||||||||||||||||||    
T  7011383 taatatgaaatttatataaaaactaggga-tgtagtggcaacttggggtctccaaagagatccgcccct 7011316  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 19779875 - 19779921
Alignment:
Q  306 aaaactggggggtgcagtggcacctgggggtctccaaagagatccgcc 353  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  19779875 aaaactggggggtgcagtggcacct-ggggtctctgaagagatccgcc 19779921  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 19779742 - 19779784
Alignment:
Q  23 ggggtgccaaatatttatgaaatatatattaaacgttttcaaa 65  Q
    ||||||||||||||||||||||||||||| ||||  |||||||    
T  19779742 ggggtgccaaatatttatgaaatatatatcaaacagtttcaaa 19779784  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 19922494 - 19922539
Alignment:
Q  282 tatgcctaatatgatatttatatcaaaactggggggtgcagtggca 327  Q
    |||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  19922494 tatggctaatatgctatatatatcaaatctggggggtgcagtggca 19922539  T

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Target: scaffold0542 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9706 - 9754
Alignment:
Q  22 gggggtgccaaatatttatgaaatatatattaaacgttttcaaataatg 70  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||| ||||    
T  9706 gggggtgccaaatatttgtggaatatatattaaacggttttaaaaaatg 9754  T

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