View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_high_20 (Length: 375)

Name: NF19409_high_20
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_high_20
NF19409_high_20
[»] chr5 (1 HSPs)
chr5 (70-361)||(14572299-14572590)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 70 - 361
Target Start/End: Original strand, 14572299 - 14572590
Alignment:
Q  70 gagaatctcactatcttcttaaaaaactccaaatcaacttttcgcacttttttctacagaattagtttttctccttatcatggtctactaattaatatag 169  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14572299 gagaatcgcactatcttcttaaaaaactccaaatcaacttttcgcacttttttctacagaattagtttttctccttatcatggtctactaattaatatag 14572398  T
Q  170 catagtttgttacttgtaacnnnnnnngatcgtttaaagtatcttataagattgaatcttttttatgtttacttgcggcacaatcttctttaatcaggat 269  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  14572399 catagtttgttacttgtaacaaaaaaagatcgtttaaagtatcttataagattgaatattttttatgtttacatgcggcacaatcttctttaatcaggat 14572498  T
Q  270 tgtccactatatatagaagcgatgcttaatttaataaatcatactttcaagcctttgtttgttttctcttctctttttgttatcaacaaact 361  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14572499 tgtccactatatatagaagcgatgcttaatttaataaaccatactttcaagcctttgtttggtttctcttctctttttgttatcaacaaact 14572590  T

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