View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_high_24 (Length: 345)
Name: NF19409_high_24
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 5127489 - 5127348
Alignment:
| Q |
54 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
153 |
Q |
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| T |
5127489 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
5127390 |
T |
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| Q |
154 |
agttgaagttaaggagaacaagattgcagtatattgacatat |
195 |
Q |
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| T |
5127389 |
tgttgaagttaaggagaataagattgcagtatattgacatat |
5127348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 5127331 - 5127182
Alignment:
| Q |
181 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
280 |
Q |
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| T |
5127331 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
5127232 |
T |
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| Q |
281 |
gacatgaagnnnnnnngactggtgtgagcttgttgacaaattatagttct |
330 |
Q |
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| T |
5127231 |
gatatgaagtttttttgactggtgtgagcttgctgacaaattatagttct |
5127182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5128362 - 5128314
Alignment:
| Q |
1 |
ataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
49 |
Q |
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| T |
5128362 |
ataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
5128314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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