View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_high_26 (Length: 339)
Name: NF19409_high_26
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 41298856 - 41298544
Alignment:
| Q |
18 |
ggaaacaagtgtctcaaatagccaaaagatggatgtcccaaacggtgatgccataaccatatttctcgttctttgctattgaactgatggtgcacatgat |
117 |
Q |
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| T |
41298856 |
ggaaacaagtgtctcaaatagccgaaagatggatgtcccaaacggtgatgccataaccatatttctcgttctttgctattgaactgatggtgcacatgat |
41298757 |
T |
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| Q |
118 |
aagctgctcctttgctaatgtcatcaaggtagtatag-ccccctctcttagtaccacacccaataatcttcttgctgaatacatcctgaagaagacaaaa |
216 |
Q |
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| T |
41298756 |
aagctgctcctttactaatgtcatcaaggtagtatagtccccctctcttagtaccacgcccaataatcttcttgctgagtacatcctgaagaagacaaaa |
41298657 |
T |
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| Q |
217 |
tgtagagtacatcattaccacacaattgagttcttcagttatttgactcacagacattaacttattagacaatgtaggaacaaggagggtgtgagataaa |
316 |
Q |
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| T |
41298656 |
tgtagagtacatcaataccacacgattgagttcatcagttatttgactcacagacattaacttattagacaatgtaggaacaaggagggtgtgagataaa |
41298557 |
T |
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| Q |
317 |
gagagtgatgatg |
329 |
Q |
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| T |
41298556 |
gagagtgatgatg |
41298544 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 525517 - 525578
Alignment:
| Q |
155 |
ccccctctcttagtaccacacccaataatcttcttgctgaatacatcctgaagaagacaaaa |
216 |
Q |
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| T |
525517 |
ccccctctcttagtaccacgcccaatgatctccttcgtgagaatatcctgaagaagacaaaa |
525578 |
T |
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