View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_high_3 (Length: 665)
Name: NF19409_high_3
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 272 - 620
Target Start/End: Original strand, 26377341 - 26377693
Alignment:
| Q |
272 |
ggttgcatgcaagatataccaaagctcttcagcgacgacggcggaatcagccaacctccgccgtgtacggtatccacggtaaaccttctgaacatgaacg |
371 |
Q |
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| T |
26377341 |
ggttgcatgcaagatataccaaagctcttcagcgacgacggcggaatcagccaacctccgccgtgtacggtatccacggtaaaccttctgaacatgaaca |
26377440 |
T |
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| Q |
372 |
gcggcgttggaatgagaagacgcgctttcaagcgcgtgaggtccggaaaactggaatggttgaggagttaatggcggatcatcatgaagggagagatgaa |
471 |
Q |
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| T |
26377441 |
gcggcgttggaatgagaagacgcgctttgaagcgcgtgaggtccggaaaactggaatggttgaggagatagtggcggatcatcgtgaagggagagatgaa |
26377540 |
T |
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| Q |
472 |
atgtcgggtcagggtattcggagctccgaaaatccgatgggtgaatgttgtat---gagaatgaagaagaagggtttgaagagtgagtctcaacctccat |
568 |
Q |
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| T |
26377541 |
atgtcgggtcagggtattcggagctccgaaaatccgatgggtgaatgttgtatgaggagaatgatgaagaagggtttgaagagtgagtttcaacctccat |
26377640 |
T |
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| Q |
569 |
taaaacaaaaaccttgttctagttttt-aagagtggtaatgaaagtgtgtttt |
620 |
Q |
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| T |
26377641 |
taaaacaaaacactggtttttgtttttgaagagtggtaattaaagtgtgtttt |
26377693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 26377128 - 26377267
Alignment:
| Q |
55 |
gaccttggaagcattgagtttgacccgtgtccaacgagacgcagcagtttcaggcaaattaaagaacgaaattgtgctatgattcaacctaacaaaatct |
154 |
Q |
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| T |
26377128 |
gaccttggaagcgttgagtttgacccgtgtccaacgagacgcagcagtttcaggcaaattaaagaacgaaattgtgctatgattcaacctaacaaaatct |
26377227 |
T |
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| Q |
155 |
atcgcttgccacctgaacaacaattcaacatttatttctc |
194 |
Q |
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| T |
26377228 |
atcgcttgccacctgaacaacaattcaacatttatttctc |
26377267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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