View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_high_4 (Length: 559)

Name: NF19409_high_4
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_high_4
NF19409_high_4
[»] chr1 (20 HSPs)
chr1 (233-537)||(31032587-31032898)
chr1 (19-233)||(31032219-31032434)
chr1 (357-532)||(29095546-29095718)
chr1 (361-532)||(34475902-34476070)
chr1 (357-531)||(1270175-1270346)
chr1 (357-532)||(20808950-20809122)
chr1 (357-531)||(9098593-9098761)
chr1 (392-525)||(24135765-24135893)
chr1 (357-532)||(16254858-16255029)
chr1 (357-495)||(47550831-47550966)
chr1 (395-474)||(2958753-2958832)
chr1 (388-532)||(34807939-34808080)
chr1 (388-532)||(42480124-42480265)
chr1 (357-531)||(45010204-45010374)
chr1 (361-479)||(44714836-44714954)
chr1 (411-532)||(4194769-4194887)
chr1 (447-524)||(41646587-41646660)
chr1 (388-439)||(4624438-4624489)
chr1 (357-403)||(41647356-41647402)
chr1 (380-473)||(27143605-27143698)
[»] chr5 (19 HSPs)
chr5 (357-532)||(32891177-32891349)
chr5 (357-531)||(4391869-4392040)
chr5 (357-531)||(37093935-37094106)
chr5 (357-534)||(8692509-8692683)
chr5 (386-501)||(3456786-3456898)
chr5 (389-532)||(11739275-11739415)
chr5 (357-532)||(34286597-34286768)
chr5 (387-532)||(228026-228168)
chr5 (389-532)||(38614236-38614380)
chr5 (376-532)||(41326491-41326644)
chr5 (385-526)||(29223474-29223610)
chr5 (357-455)||(40925912-40926010)
chr5 (359-526)||(28434210-28434374)
chr5 (380-453)||(6614293-6614366)
chr5 (375-531)||(35672352-35672504)
chr5 (357-470)||(5481414-5481527)
chr5 (377-498)||(16516960-16517078)
chr5 (389-515)||(31644658-31644769)
chr5 (491-531)||(43141523-43141563)
[»] chr3 (20 HSPs)
chr3 (357-532)||(38176413-38176585)
chr3 (357-532)||(45166229-45166401)
chr3 (360-532)||(521791-521960)
chr3 (361-529)||(1561283-1561448)
chr3 (358-532)||(50612899-50613070)
chr3 (362-532)||(31788308-31788475)
chr3 (362-532)||(36517517-36517684)
chr3 (357-532)||(23643003-23643175)
chr3 (357-534)||(39145252-39145426)
chr3 (357-525)||(20912177-20912342)
chr3 (392-532)||(34624535-34624671)
chr3 (359-531)||(52546746-52546915)
chr3 (382-531)||(51297074-51297219)
chr3 (388-498)||(9496567-9496674)
chr3 (388-452)||(22650450-22650514)
chr3 (482-526)||(544643-544687)
chr3 (462-532)||(43203251-43203318)
chr3 (102-163)||(10755806-10755867)
chr3 (437-473)||(29011343-29011379)
chr3 (410-473)||(38169328-38169389)
[»] chr2 (19 HSPs)
chr2 (357-532)||(13685996-13686168)
chr2 (360-526)||(41464926-41465089)
chr2 (388-534)||(42263832-42263975)
chr2 (357-526)||(45093173-45093335)
chr2 (357-520)||(3810293-3810453)
chr2 (364-514)||(25414934-25415081)
chr2 (357-532)||(28429284-28429453)
chr2 (357-517)||(14941011-14941169)
chr2 (357-502)||(19898952-19899094)
chr2 (390-527)||(29689277-29689408)
chr2 (405-529)||(35676349-35676470)
chr2 (380-518)||(35323522-35323657)
chr2 (392-532)||(2752692-2752829)
chr2 (429-532)||(28716435-28716535)
chr2 (357-451)||(28716341-28716435)
chr2 (423-531)||(23454350-23454456)
chr2 (387-532)||(16058426-16058569)
chr2 (372-532)||(36690860-36691016)
chr2 (357-494)||(40126524-40126658)
[»] chr4 (16 HSPs)
chr4 (361-532)||(24683079-24683247)
chr4 (357-532)||(18375415-18375586)
chr4 (357-532)||(41633220-41633391)
chr4 (361-532)||(26179238-26179406)
chr4 (357-477)||(54358167-54358287)
chr4 (357-521)||(37674024-37674185)
chr4 (389-532)||(47281588-47281732)
chr4 (357-532)||(17847566-17847733)
chr4 (357-479)||(4512187-4512309)
chr4 (357-473)||(23348137-23348256)
chr4 (357-456)||(41878592-41878691)
chr4 (357-479)||(54021266-54021391)
chr4 (357-496)||(47838967-47839102)
chr4 (447-532)||(41878324-41878406)
chr4 (487-532)||(4098532-4098577)
chr4 (357-417)||(41497915-41497977)
[»] chr7 (9 HSPs)
chr7 (361-532)||(23991978-23992146)
chr7 (357-536)||(27425777-27425953)
chr7 (389-526)||(22326867-22327001)
chr7 (385-532)||(17611845-17611989)
chr7 (360-472)||(42195437-42195549)
chr7 (367-520)||(8307540-8307687)
chr7 (422-470)||(41405803-41405851)
chr7 (386-473)||(25686424-25686514)
chr7 (481-532)||(19479444-19479495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (388-534)||(492667-492810)
[»] chr6 (8 HSPs)
chr6 (361-526)||(7646802-7646964)
chr6 (357-531)||(25935512-25935683)
chr6 (359-473)||(29487541-29487655)
chr6 (396-502)||(12607123-12607226)
chr6 (380-433)||(28898429-28898482)
chr6 (453-532)||(17366853-17366929)
chr6 (406-479)||(29637008-29637081)
chr6 (478-526)||(28898504-28898552)
[»] chr8 (16 HSPs)
chr8 (357-532)||(41322532-41322704)
chr8 (357-466)||(15561938-15562047)
chr8 (361-526)||(29314008-29314170)
chr8 (360-513)||(36473076-36473226)
chr8 (372-525)||(39112658-39112808)
chr8 (380-532)||(4851736-4851885)
chr8 (360-516)||(11653738-11653894)
chr8 (389-531)||(34392112-34392251)
chr8 (372-502)||(2001681-2001807)
chr8 (385-528)||(1005596-1005736)
chr8 (357-434)||(33888946-33889023)
chr8 (396-532)||(8551492-8551625)
chr8 (392-494)||(11643324-11643423)
chr8 (410-479)||(4794174-4794243)
chr8 (380-498)||(5548972-5549087)
chr8 (397-473)||(37919603-37919679)
[»] scaffold0132 (2 HSPs)
scaffold0132 (425-526)||(545-642)
scaffold0132 (425-526)||(8505-8602)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 233 - 537
Target Start/End: Original strand, 31032587 - 31032898
Alignment:
Q  233 ataaaagtattatgtaaacctttagtgagcttaccgttgtgatagaattcaacaaa-------------tcaattatcaacaaatcccaaaaaactttga 319  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||             |||||| ||||||||||||||||||||||||    
T  31032587 ataaaagtattatgtaaacctttagtgagctta--gttgtgatagaattcaacaaagaaattcaacaaatcaattttcaacaaatcccaaaaaactttga 31032684  T
Q  320 taaaaccaataggaaaatgctatttttctnnnnnnnntagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcact 419  Q
    ||||||||||||||||||| |||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  31032685 taaaaccaataggaaaatgttatttttctagaaaaa-tagcatcaagaatttttcaagatacagttgacaagttttaattgcatgatttatttgttcact 31032783  T
Q  420 ccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctag 519  Q
      |||||||||||||||||||||||||| |||||||||||||||||||||||||    ||| ||||||||||||||||||||| ||||||||||||||||    
T  31032784 ttctatttttcagccacacctccttgaactgtggcaaatagtgcattgtgattg---actgatctttattcttgaagaattcttgatgatatttttctag 31032880  T
Q  520 agatataacattgtttaa 537  Q
    ||||||||||||| ||||    
T  31032881 agatataacattgcttaa 31032898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 31032219 - 31032434
Alignment:
Q  19 attacgcgcatcatctactaattcgttggctatcaaaatatcatccnnnnnnnnttt-attgaacaaaagtcgattgagattctgacacaaccttaccaa 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||         || |||||||||||||||| |||||||||||||||||||||||||    
T  31032219 attacgcgcatcatctactaatttgttggctatcaaaatatcatccaaaaaaaaattcattgaacaaaagtcgactgagattctgacacaaccttaccaa 31032318  T
Q  118 ccatcttccttagcctattaacaaaaaccttagataaaattttatataagctgccaactaaagaaataggtcgaaaatttgccagcttttgaggacttac 217  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  31032319 ccaccttccttagcctattaacaagaaccttagataaaattttatataagcagccaaccaaagaaataggtcgaaaatttgccagcttttgaggacttac 31032418  T
Q  218 gactttggaaatcaaa 233  Q
    ||||||||||||||||    
T  31032419 gactttggaaatcaaa 31032434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 357 - 532
Target Start/End: Original strand, 29095546 - 29095718
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    ||||||||| || | ||||||| | ||||| ||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  29095546 tagcatcaaaaaattttcaagacatagttgccaagttttaattgcatgatatctttgttcacttcctatttttcagccacacctccttgaattgtggcaa 29095645  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||   |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  29095646 atagtgcattgtgattg---gctgctctttattcttgaagaattcttgatgttatttttctagagatataacattg 29095718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 361 - 532
Target Start/End: Complemental strand, 34476070 - 34475902
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||||||||| ||||||| | || ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  34476070 atcaagaatttttcaagacaaagctgacaagttttaattgcatgattgatttgttcacttcctatttttcagccacacctccttgaattggggcagatag 34475971  T
Q  461 tgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||   |||||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  34475970 tgcattgtgattggc---tgctctttattcttgaagaattcttgatgttatttttctagagatatagcattg 34475902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 357 - 531
Target Start/End: Complemental strand, 1270346 - 1270175
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||||    
T  1270346 tagcatcaaaaatttttcaagacacagttgacaagttttaattgcacgatttatttattcacttcctatttttcagccacaccttcttgaattgtggcaa 1270247  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||||||||||| |||||   | |||||||||||||||||||||||| |||| |||||||||||||||||| ||||    
T  1270246 atagtgcattgagattg---gttgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 1270175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 20809122 - 20808950
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| |||||||||| | || |||||||||||| |||| |||| | ||||||| |||| |||||||||||| ||||||||||||||||||    
T  20809122 tagcatcaagaatttttcaagatacgggtggcaagttttaattacatggtttattcgttcacttcctagttttcagccacatctccttgaattgtggcaa 20809023  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||| |||||||||||||    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  20809022 ataatgcattgtgattg---actgctctttattcttgaagaattcttgatgttatttttctagagatatagcattg 20808950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 357 - 531
Target Start/End: Original strand, 9098593 - 9098761
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||| | |||| ||||||||||||||||||||||||| ||||||||| | |||| ||||||||||||| ||||||   |||||     
T  9098593 tagcatcaagaatttttcaaaacacagctgacaagttttaattgcatgatttatttgttcacttcgtattattcagccacaccttcttgaa---tggcag 9098689  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    |||||||||||||||||   |||||||||||||||| ||||||||| |||| |||||||||||||||||| ||||    
T  9098690 atagtgcattgtgattg---gctgctctttattcttaaagaattcttgatgttatttttctagagatatatcatt 9098761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 392 - 525
Target Start/End: Complemental strand, 24135893 - 24135765
Alignment:
Q  392 ttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattct 491  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||   |||||||||||||||    
T  24135893 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattg---gctgctctttattct 24135799  T
Q  492 tgaagaattctcgatgatatttttctagagatat 525  Q
    ||||||||||| |||| ||||||||| |||||||    
T  24135798 tgaagaattcttgatgttatttttcttgagatat 24135765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 16255029 - 16254858
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||| | |||  ||||||  |||||||| |||||||| ||||||||| |||||| ||||||||||||||||| |||| ||||||    
T  16255029 tagcatcaagaatttttcaatacacaactgacaaaatttaattgtatgatttatttgttcacttcctattattcagccacacctccttaaattatggcaa 16254930  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||   |||| |||||||||||||||||||||  ||| |||||||| | |||||||| ||||    
T  16254929 atagtgcattgtgattg---gctgatctttattcttgaagaattct-tatgttatttttccaaagatataatattg 16254858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 357 - 495
Target Start/End: Complemental strand, 47550966 - 47550831
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| |||| || ||||||||||||||||||||||  |||||| | ||||||||| || ||||||||||| |||||||||||    
T  47550966 tagcatcaagaatttttcaagaaacagctggcaagttttaattgcatgatttatatgttcatttcctattttttagtcacacctccttaaattgtggcaa 47550867  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaa 495  Q
    |||||||||||| |||   ||||||||||||||||||||    
T  47550866 atagtgcattgtaatt---tgctgctctttattcttgaa 47550831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 2958753 - 2958832
Alignment:
Q  395 taattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattgg 474  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2958753 taattgcatgatttatttgttcactccctatttttcagccacacctccttgaattttggcaaatagtgcattgtgattgg 2958832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 388 - 532
Target Start/End: Complemental strand, 34808080 - 34807939
Alignment:
Q  388 caagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctcttta 487  Q
    |||||||||||||||||||||| || |||||| | |||||||||||||||||||||| |||| ||  ||||||| |||||||||||    ||||||||||    
T  34808080 caagttttaattgcatgatttatttattcacttcatatttttcagccacacctccttaaattatgataaatagtacattgtgattg---actgctcttta 34807984  T
Q  488 ttcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    || |||||||||||| |||| |||||||| |||||||||| ||||    
T  34807983 tttttgaagaattcttgatgttatttttcgagagatataaaattg 34807939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 388 - 532
Target Start/End: Complemental strand, 42480265 - 42480124
Alignment:
Q  388 caagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctcttta 487  Q
    |||||||||||||||| ||||| || |||| |  |||||||||||||||||||| ||||||||||| ||||| | |||||| ||||    ||||| ||||    
T  42480265 caagttttaattgcataatttatttattcattttctatttttcagccacacctcattgaattgtggtaaataatacattgtaattg---actgctattta 42480169  T
Q  488 ttcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||    
T  42480168 ttcttgaagaattcttgatgttatttttgtagagatataacattg 42480124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 357 - 531
Target Start/End: Complemental strand, 45010374 - 45010204
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||| ||||||| ||||| | |||  |||||| |||||||||||||||||| ||||||||| | |||||||||||||||||| | ||||||||| |||    
T  45010374 tagcataaagaatttttcaaaacacatctgacaaattttaattgcatgatttatttgttcacttcttatttttcagccacaccttc-tgaattgtgacaa 45010276  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||| |||||| |  |||   | |||||||||||||| ||||||||| |||| ||| ||| |||||||||| ||||    
T  45010275 ataatgcattatatttg---gatgctctttattcttaaagaattcttgatgttatctttttagagatatagcatt 45010204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 361 - 479
Target Start/End: Original strand, 44714836 - 44714954
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||||||||| ||||||||| ||||| ||||||||||||| |||||||| || || | |   ||||||||||||||| ||| |||||||||||||||||     
T  44714836 atcaagaatttttcaagatatagttggcaagttttaattgtatgatttatttttttattttttatttttcagccacatctcgttgaattgtggcaaataa 44714935  T
Q  461 tgcattgtgattggctgct 479  Q
    ||||||||||||| |||||    
T  44714936 tgcattgtgattgactgct 44714954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 411 - 532
Target Start/End: Complemental strand, 4194887 - 4194769
Alignment:
Q  411 ttgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgata 510  Q
    ||||||||| |||||||||||| || | ||| ||||||| ||| |||||||  |||||||||| ||| |   |||||||||||||||||||| |||| ||    
T  4194887 ttgttcacttcctatttttcagtcatatctctttgaattatggtaaatagtatattgtgattgactgtt---ctttattcttgaagaattcttgatgtta 4194791  T
Q  511 tttttctagagatataacattg 532  Q
    |||||||||||||||| |||||    
T  4194790 tttttctagagatatagcattg 4194769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 447 - 524
Target Start/End: Complemental strand, 41646660 - 41646587
Alignment:
Q  447 attgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagata 524  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  41646660 attgtggcaaatagtgcattgtgattg---actgctctttattcttgaagaattct-gatgttatttttctagagata 41646587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 4624489 - 4624438
Alignment:
Q  388 caagttttaattgcatgatttaattgttcactccctatttttcagccacacc 439  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  4624489 caagttttaattgcatgatttatttgttcacttcctatttttcagccacacc 4624438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 41647402 - 41647356
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcat 403  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  41647402 tagcatcaagaatttttcaagacacagttgacaagttttaattgcat 41647356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 473
Target Start/End: Original strand, 27143605 - 27143698
Alignment:
Q  380 acagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattg 473  Q
    ||||||| ||||| || |||| || || || ||||| ||| |||||||||||  |||||||| || |||||| ||||||| | |||||||||||    
T  27143605 acagttggcaagtgtttattgtattatgtatttgtttacttcctatttttcaatcacacctctttaaattgtagcaaataatacattgtgattg 27143698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 32891349 - 32891177
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    ||||||||| |||| ||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  32891349 tagcatcaacaatttttcaagacacagttgacaaattttaattgcatgatttatttgttcacttcctatcttttagccacacctccttgaattgtggcaa 32891250  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||||   |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  32891249 atagtgcattgtgattggc---tgctttttattcttgaagaattcttgatgttatttttctagagatataacattg 32891177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 357 - 531
Target Start/End: Original strand, 4391869 - 4392040
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| |||| || |||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  4391869 tagcatcaagaatttttcaagacacagctggcaagttttaattgcataatttatttgttcacttcctatttttcagccacagctccttgaattgtggcaa 4391968  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    | |||||||||| ||||   |||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  4391969 acagtgcattgtaattg---gctgctctttattcttgaagaattcttgatgttatttttctagagatataacatt 4392040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 357 - 531
Target Start/End: Original strand, 37093935 - 37094106
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||| ||||    
T  37093935 tagcatcaagaatttttcaagacacagttgacaagttttaattgcataatttatttgttcacttcctatttttcagtcacacctccttgaattgttgcaa 37094034  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||||| || ||||||||    ||||||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  37094035 atagtacaatgtgattg---actgctctttattcttgaagaattgttgatgttatttttctagagatataacatt 37094106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 357 - 534
Target Start/End: Complemental strand, 8692683 - 8692509
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||  ||||||| |||| |||||| |||||||||||||||||| || ||||||  ||||||||| ||||||| |||||||||||||||||    
T  8692683 tagcatcaagaatctttcaagacacagctgacaaattttaattgcatgatttatttattcactttctatttttctgccacacttccttgaattgtggcaa 8692584  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattgtt 534  Q
    ||||| |||| ||||||   | |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  8692583 atagtacattatgattg---gatgctatttattcttgaagaattcttgatgttatttttctagagatataacattgtt 8692509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 3456898 - 3456786
Alignment:
Q  386 gacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctt 485  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||    ||||||||    
T  3456898 gacaagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttgaattgtggcaaatagtgcattgtgagtg---actgctctt 3456802  T
Q  486 tattcttgaagaattc 501  Q
    ||||||||||||||||    
T  3456801 tattcttgaagaattc 3456786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 389 - 532
Target Start/End: Original strand, 11739275 - 11739415
Alignment:
Q  389 aagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttat 488  Q
    ||||||||||||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||||     ||||| |||||    
T  11739275 aagttttaattgcataatttatttgttcacctcctatttttcagccacacctccttgaattgtggcaaacagtgcattatgatt---acctgctttttat 11739371  T
Q  489 tcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||| |||| |||||||||| |||||||||||||    
T  11739372 tcttgaagaattcttgatgttatttttctaaagatataacattg 11739415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 34286768 - 34286597
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    ||||||||| | || ||||||| |||  |||||| |||||||||||||||||| ||||||| | |||||||||||||||||||| | | |||||||||||    
T  34286768 tagcatcaaaattttttcaagacacaactgacaaattttaattgcatgatttatttgttcatttcctatttttcagccacaccttcattaattgtggcaa 34286669  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||| |||||||||||||    |||||||||||| |||| | |||| ||||||| ||||||||||| ||||    
T  34286668 atagtgcatcgtgattggctgct----tttattcttgaataattattgatgttatttttttagagatataatattg 34286597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 387 - 532
Target Start/End: Complemental strand, 228168 - 228026
Alignment:
Q  387 acaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctcttt 486  Q
    |||||||||||||||||||| || |||||||||  ||| ||||||| |||||||||||||||||||| |||||||||||||||||||     || |||||    
T  228168 acaagttttaattgcatgatatatttgttcactttctacttttcagtcacacctccttgaattgtggtaaatagtgcattgtgattg---attgttcttt 228072  T
Q  487 attcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||| |||||| |||| |||||||||||||||||| |||||    
T  228071 attcttgaaaaattcttgatgttatttttctagagatatatcattg 228026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 389 - 532
Target Start/End: Original strand, 38614236 - 38614380
Alignment:
Q  389 aagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttat 488  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||  || |||||||||    
T  38614236 aagttttaattgcatgatttatttgtttacttcctatttttcagccacatcttcttgaattgtggcaattagtgcattgtgattgg--gc-gctctttat 38614332  T
Q  489 tctt---gaagaattctcgatgatatttttcta-gagatataacattg 532  Q
    ||||   |||||||||| |||| ||||||||||  |||||||||||||    
T  38614333 tcttgaagaagaattcttgatgttatttttctattagatataacattg 38614380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 376 - 532
Target Start/End: Original strand, 41326491 - 41326644
Alignment:
Q  376 agatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggc 475  Q
    ||||||||||| ||||| || |||||||  | || ||||| ||| |||||||||||||||||||||||||||||||| |||||||  |||||||||||      
T  41326491 agatacagttggcaagtgtttattgcatcgtgtatttgtttacttcctatttttcagccacacctccttgaattgtgtcaaatagcacattgtgattg-- 41326588  T
Q  476 tgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
     |||||||||||||||||||||  ||  |||| |||||||||||||||||| |||||    
T  41326589 -gctgctctttattcttgaagagatcgtgatgttatttttctagagatatagcattg 41326644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 385 - 526
Target Start/End: Complemental strand, 29223610 - 29223474
Alignment:
Q  385 tgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctct 484  Q
    ||||||||||||||||||||||||| |||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||         
T  29223610 tgacaagttttaattgcatgatttatttgtacacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgct----c 29223515  T
Q  485 ttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    ||||| |||||||||||| |||  |||||||||| |||||||    
T  29223514 ttatt-ttgaagaattcttgatattatttttctaaagatata 29223474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 357 - 455
Target Start/End: Complemental strand, 40926010 - 40925912
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggca 455  Q
    |||||||||||||| ||||||| |||  |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  40926010 tagcatcaagaatttttcaagacacatctgacaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctctttgaattgtggca 40925912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 359 - 526
Target Start/End: Complemental strand, 28434374 - 28434210
Alignment:
Q  359 gcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaat 458  Q
    |||||||||||| ||  ||||||||||  | |||||||||||||||||||| || |||| |  ||||||| ||| |||| || ||| |||||||| ||||    
T  28434374 gcatcaagaatttttttagatacagttagcgagttttaattgcatgatttatttattcattttctattttacagtcacatcttcttaaattgtggtaaat 28434275  T
Q  459 agtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    |||||||||| ||||   ||||||||||||| || |||||||||| ||| ||||||||||||||||||    
T  28434274 agtgcattgtaattg---gctgctctttatttttaaagaattctcaatgttatttttctagagatata 28434210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 6614293 - 6614366
Alignment:
Q  380 acagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtgg 453  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  6614293 acagtcgacaagttttaattgcatgatttatttgttcacttcctatttttcaggcacacctccttgaattgtgg 6614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 375 - 531
Target Start/End: Original strand, 35672352 - 35672504
Alignment:
Q  375 aagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattgg 474  Q
    |||| |||||||| || |||||||||||||||||| ||||||||| |||||| || | | |||  ||||| ||||| |  |||||||||||||||||||     
T  35672352 aagacacagttgataaattttaattgcatgatttatttgttcacttcctattgttta-caacatttccttaaattgcgataaatagtgcattgtgattga 35672450  T
Q  475 ctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||||   |||||||||||||| ||||||  ||| |||||||||||| ||||||||||    
T  35672451 ctgc---tctttattcttgaaaaattcttaatgttatttttctagaaatataacatt 35672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 357 - 470
Target Start/End: Complemental strand, 5481527 - 5481414
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| || |||| |||||||  || |||||| ||||||||||| |||||||||   ||||||||||||||| |||  |||||||||||||    
T  5481527 tagcatcaagaattttttaagacacagttggtaaattttaactgcatgatttatttgttcactttttatttttcagccacatctctatgaattgtggcaa 5481428  T
Q  457 atagtgcattgtga 470  Q
    ||| ||||||||||    
T  5481427 ataatgcattgtga 5481414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 16516960 - 16517078
Alignment:
Q  377 gatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggct 476  Q
    ||||||| || |||||||||||| ||||||||| |||||||||| ||||| |||||| ||| |||| || ||||| ||||  |||| ||| ||||||       
T  16516960 gatacagctggcaagttttaatttcatgatttatttgttcactctctattattcagcaacatctccgtgtattgttgcaagcagtgaattatgattg--- 16517056  T
Q  477 gctgctctttattcttgaagaa 498  Q
     ||||||||||||||| |||||    
T  16517057 actgctctttattcttaaagaa 16517078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 515
Target Start/End: Complemental strand, 31644769 - 31644658
Alignment:
Q  389 aagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttat 488  Q
    |||||||||||||||| |||| ||||||||| ||||||||||| ||||| |            || |||||||||||||||||||||||||   ||||||    
T  31644769 aagttttaattgcatggtttatttgttcacttcctatttttcaaccacatc------------ggtaaatagtgcattgtgattggctgct---ctttat 31644685  T
Q  489 tcttgaagaattctcgatgatattttt 515  Q
    |||||||||||| | |||| |||||||    
T  31644684 tcttgaagaattattgatgttattttt 31644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 43141563 - 43141523
Alignment:
Q  491 ttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    |||||||||||| |||| |||||||||||||| ||||||||    
T  43141563 ttgaagaattcttgatgctatttttctagagaaataacatt 43141523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 357 - 532
Target Start/End: Original strand, 38176413 - 38176585
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||| ||||||| ||||||| ||||||| ||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||| |||||    
T  38176413 tagcattaagaatttttcaagacacagttggcaagttttaattgcatgttttatttgttcacttcatatttttcagccacacctccttgaattgaggcaa 38176512  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||| |||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38176513 atagtgcattgcgattg---gctgctctttattcttgaagaattcttgatgatatttttctagagatataacattg 38176585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 45166401 - 45166229
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| |||||||  |||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  45166401 tagcatcaagaatttttcaagacgcagttggcaaattttaattgcatgatttatttgtccactccctatttttcagccacgcctccttgaattgtggcaa 45166302  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||||   ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  45166301 atagtgcattgtgattggc---tgctctttattattgaagaattcttgatgttatttttctagagatataacattg 45166229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 360 - 532
Target Start/End: Original strand, 521791 - 521960
Alignment:
Q  360 catcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaata 459  Q
    ||||||||||| || |||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  521791 catcaagaattttttaagacacagttgtcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaata 521890  T
Q  460 gtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||||   |||||||||||||||||||||||||| |||| ||||| |||||| ||||| |||||    
T  521891 gtgcattgtgattg---gctgctctttattcttgaagaattcttgatgttatttatctagatatatagcattg 521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 361 - 529
Target Start/End: Original strand, 1561283 - 1561448
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||||||||| ||  ||| |||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1561283 atcaagaattttttcagacacagctgacaagtttcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatag 1561382  T
Q  461 tgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataaca 529  Q
    |||||||||||||   | |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  1561383 tgcattgtgattg---gttgctctttattcttgaagaattcttgatgttatttttctagagatataaca 1561448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 358 - 532
Target Start/End: Original strand, 50612899 - 50613070
Alignment:
Q  358 agcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaa 457  Q
    ||||||||||||| ||||| | |||| ||||||||||||||||||| ||||| |||||||||   |||||||||| ||||||||||||||||||||||||    
T  50612899 agcatcaagaatttttcaatacacagctgacaagttttaattgcataatttatttgttcactttatatttttcagtcacacctccttgaattgtggcaaa 50612998  T
Q  458 tagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||||||   |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  50612999 tagtgcattgtgattg---gctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattg 50613070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 362 - 532
Target Start/End: Complemental strand, 31788475 - 31788308
Alignment:
Q  362 tcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagt 461  Q
    ||||||||| ||||||| ||| |||||||||||||| |||| |||||| ||||||||| |||||||||||  |||||||||||||||||||| |||||||    
T  31788475 tcaagaatttttcaagacacaattgacaagttttaactgcaagatttatttgttcacttcctatttttcaatcacacctccttgaattgtggtaaatagt 31788376  T
Q  462 gcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||||   |||||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  31788375 gcattgtgattggc---tgctctttattcttgaagaattcttgatgttatttttctagagatatatcattg 31788308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 362 - 532
Target Start/End: Complemental strand, 36517684 - 36517517
Alignment:
Q  362 tcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagt 461  Q
    ||||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||||| ||||||||| |  ||||||||||||||||||||||||||||    
T  36517684 tcaagaatttttcaaaacacagttggcaagttttaattgcatgatttatttgttcacttcctattttttattcacacctccttgaattgtggcaaatagt 36517585  T
Q  462 gcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||    ||||||||||||||||||||||||| |||| ||||| |||||| ||||| |||||    
T  36517584 gcattgtgattg---actgctctttattcttgaagaattcttgatgttatttgtctagatatatagcattg 36517517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 357 - 532
Target Start/End: Original strand, 23643003 - 23643175
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| |||| |||||| |||||||| ||| ||||| ||||||||| ||||||||| || |||||||||||||||||||||||    
T  23643003 tagcatcaagaatttttcaagacacagctgacaaattttaattccataatttatttgttcacttcctattttttagtcacacctccttgaattgtggcaa 23643102  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||    ||  | ||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  23643103 atagtgcattgtgattg---actaatatttattcttgaagaattcttgatgttatttttctagagatacaacattg 23643175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 357 - 534
Target Start/End: Complemental strand, 39145426 - 39145252
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||| |||||||  ||||||| | |||||||||||| || ||||| ||||||||| ||||    
T  39145426 tagcatcaagaatttgtcaagacacagttgtcaagttttaattgtatgatttctttgttcatttcctatttttcagtcatacctcattgaattgtagcaa 39145327  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattgtt 534  Q
    |||||||||||| ||||   |||||| ||||||||| ||||||||| |||  |||||||||||||||||| |||||||    
T  39145326 atagtgcattgtaattg---gctgctttttattcttaaagaattcttgatattatttttctagagatatagcattgtt 39145252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 357 - 525
Target Start/End: Complemental strand, 20912342 - 20912177
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| || |||| | || ||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||| || |||    
T  20912342 tagcatcaagaatttttaaagacatagctgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttaaattatgacaa 20912243  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatat 525  Q
    |||||||||||| ||||    ||||||||||||||||||||||||| |||| ||||||| || ||||||    
T  20912242 atagtgcattgttattg---actgctctttattcttgaagaattcttgatgttatttttttaaagatat 20912177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 392 - 532
Target Start/End: Original strand, 34624535 - 34624671
Alignment:
Q  392 ttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattct 491  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||  |||||||| |||||||||||||||||||   |||||||||||||||    
T  34624535 ttttaattgcatgatttatttgttcacttcctatttttcagccacacttcctcaaattgtggtaaatagtgcattgtgattg---gctgctctttattct 34624631  T
Q  492 tgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||  ||| |||||||||||||||||| |||||    
T  34624632 tgaagaattct-tatgttatttttctagagatatagcattg 34624671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 359 - 531
Target Start/End: Complemental strand, 52546915 - 52546746
Alignment:
Q  359 gcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaat 458  Q
    |||||||||||| | ||||| |||  | ||||||||||||||||| ||||| ||||||| | |||||||||||  |||||||| |||||||||| |||||    
T  52546915 gcatcaagaattttccaagacacaccttacaagttttaattgcataatttatttgttcatttcctatttttcactcacacctcattgaattgtgacaaat 52546816  T
Q  459 agtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||  |||||||||||||   |||||||||||||||||||||| | |||| |||||||||| ||||||| ||||    
T  52546815 agcacattgtgattggc---tgctctttattcttgaagaatttttgatgttatttttctaaagatatatcatt 52546746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 382 - 531
Target Start/End: Original strand, 51297074 - 51297219
Alignment:
Q  382 agttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgc 481  Q
    |||||| || |||||||||||||||||| |||||||||  ||||||||||| || ||||  ||||||||||||||||||||||||||| |||   ||||     
T  51297074 agttgataaattttaattgcatgatttatttgttcactttctatttttcagtcatacctttttgaattgtggcaaatagtgcattgtggttg---gctgt 51297170  T
Q  482 tctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||||||| ||||||| | ||| |||| |||||||||||||||||||||||    
T  51297171 tctttatgcttgaag-actcttgatgttatttttctagagatataacatt 51297219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 498
Target Start/End: Complemental strand, 9496674 - 9496567
Alignment:
Q  388 caagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctcttta 487  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| |  || ||||||||||| |||| ||||||||||   ||| |||||||    
T  9496674 caagctttaactgcatgatttatttgttcactccctatttttcagcaacaccactgtgtattgtggcaaacagtgaattgtgattg---gctactcttta 9496578  T
Q  488 ttcttgaagaa 498  Q
    |||||||||||    
T  9496577 ttcttgaagaa 9496567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 22650450 - 22650514
Alignment:
Q  388 caagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtg 452  Q
    |||||||||||||||||||||| |||||||||   || ||||||||||||||||||| |||||||    
T  22650450 caagttttaattgcatgatttatttgttcactttttacttttcagccacacctccttaaattgtg 22650514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 526
Target Start/End: Complemental strand, 544687 - 544643
Alignment:
Q  482 tctttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    ||||||||||||||||||||| | || ||||||||||||||||||    
T  544687 tctttattcttgaagaattcttggtgttatttttctagagatata 544643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 532
Target Start/End: Complemental strand, 43203318 - 43203251
Alignment:
Q  462 gcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||||||||   ||||||| |||||||||||| |||| ||||||| |||| ||||| |||||    
T  43203318 gcattgtgattggctgct---ctttatttttgaagaattcttgatgttatttttttagaaatatagcattg 43203251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 10755806 - 10755867
Alignment:
Q  102 gacacaaccttaccaaccatcttccttagcctattaacaaaaaccttagataaaattttata 163  Q
    ||||| ||||||||||||| ||| || |||| |||| | ||||| |||||||||||||||||    
T  10755806 gacaccaccttaccaaccacctttctaagccgattagccaaaactttagataaaattttata 10755867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 29011343 - 29011379
Alignment:
Q  437 acctccttgaattgtggcaaatagtgcattgtgattg 473  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  29011343 acctccttgaattgtggtaaatagtacattgtgattg 29011379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 473
Target Start/End: Original strand, 38169328 - 38169389
Alignment:
Q  410 attgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattg 473  Q
    |||||||||| ||||||||| || |||||||||||| |||||| |||  |||| ||||||||||    
T  38169328 attgttcacttcctattttttagtcacacctccttgtattgtgacaa--agtggattgtgattg 38169389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 13686168 - 13685996
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| || |||| ||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  13686168 tagcatcaagaattttttaagacacaattggcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 13686069  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
     ||||||||||||||||||   ||||||||||||||||| |||||| |||| |||||||||||||||||| |||||    
T  13686068 gtagtgcattgtgattggc---tgctctttattcttgaaaaattcttgatgttatttttctagagatatagcattg 13685996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 360 - 526
Target Start/End: Original strand, 41464926 - 41465089
Alignment:
Q  360 catcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaata 459  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||||||||| ||||||||    
T  41464926 catcaagaatttttcaagacacagttgacaagttttaattgcatgatttatttgttcactttctatttttcaaccacacctccttgaattgcggcaaata 41465025  T
Q  460 gtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    ||||||||||||   | ||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  41465026 gtgcattgtgat---ccgctgcactttattcttgaagaattcttgatgttatttttctagagatata 41465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 388 - 534
Target Start/End: Complemental strand, 42263975 - 42263832
Alignment:
Q  388 caagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctcttta 487  Q
    |||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||   |||||||||    
T  42263975 caagttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggc---tgctcttta 42263879  T
Q  488 ttcttgaagaattctcgatgatatttttctagagatataacattgtt 534  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  42263878 ttcttgaagaattcttgatgttatttttctagagatataacattgtt 42263832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 357 - 526
Target Start/End: Original strand, 45093173 - 45093335
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| || ||||||||||||  || |||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||||    
T  45093173 tagcatcaagaattttttaagatacagttgggaaattttaattgcatgatttaattgtttacttcctatttttcagtcatacctccttgaattgtggcaa 45093272  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    |||||||||||||||       |||||||||||||||||||||| | |||| ||||||||||||||||||    
T  45093273 atagtgcattgtgat-------tgctctttattcttgaagaattattgatgttatttttctagagatata 45093335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 357 - 520
Target Start/End: Original strand, 3810293 - 3810453
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||| | ||||||| |||| || |||||||||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||    
T  3810293 tagcatcaagaaattttcaagacacagctggcaagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttgaattgtggcaa 3810392  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctaga 520  Q
    |||||||||||| ||||   ||| |||||||||||||||||||| |  ||| ||||||||||||    
T  3810393 atagtgcattgtaattg---gctactctttattcttgaagaattattaatgttatttttctaga 3810453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 364 - 514
Target Start/End: Complemental strand, 25415081 - 25414934
Alignment:
Q  364 aagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgc 463  Q
    ||||||| ||||||| |||| ||| ||||||||||||||||||||| |||||||||  || ||||||||||| |||||||||||||||||||||||||||    
T  25415081 aagaatttttcaagacacagctgataagttttaattgcatgatttatttgttcactttctttttttcagccatacctccttgaattgtggcaaatagtgc 25414982  T
Q  464 attgtgattggctgctgctctttattcttgaagaattctcgatgatatttt 514  Q
    ||||||||||    ||| ||||||||||||||||||||| |||| ||||||    
T  25414981 attgtgattg---actgttctttattcttgaagaattcttgatgttatttt 25414934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 28429453 - 28429284
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| |||| || ||   ||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||| |||| ||||||    
T  28429453 tagcatcaagaatttttcatgacac---tgacaagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttaaattatggcaa 28429357  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||| ||||||||| |||   |||||||||||||||||||||||||| |||  |||||||||| ||||||| |||||    
T  28429356 ataatgcattgtgtttg---gctgctctttattcttgaagaattcttgatattatttttctaaagatatagcattg 28429284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 517
Target Start/End: Original strand, 14941011 - 14941169
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttc-agccacacctccttgaattgtggca 455  Q
    |||||||||||||| ||||||| |||  || |||||||||||| ||||||||| ||||||||| | |||||||| || |||||||| |||||||||||||    
T  14941011 tagcatcaagaatttttcaagacacaactggcaagttttaatttcatgatttatttgttcacttcttatttttcgagtcacacctctttgaattgtggca 14941110  T
Q  456 aatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttct 517  Q
    ||||||||||||||||||    ||||||||||||||||||||||| | |||| |||||||||    
T  14941111 aatagtgcattgtgattg---actgctctttattcttgaagaattattgatgttatttttct 14941169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 357 - 502
Target Start/End: Complemental strand, 19899094 - 19898952
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||| ||||| ||||||| |||  || |||||||||||||||||||||| ||||||||| |||| |||||||| | |||||||||||||||| |||    
T  19899094 tagcatcacgaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttcctaattttcagcaatacctccttgaattgtgacaa 19898995  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattct 502  Q
    ||| |||||||||||||||   ||||||||||||||||||||||||    
T  19898994 ataatgcattgtgattggc---tgctctttattcttgaagaattct 19898952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 390 - 527
Target Start/End: Original strand, 29689277 - 29689408
Alignment:
Q  390 agttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttatt 489  Q
    |||||||||||||||||||| | ||||||| |||||||||||| || ||||||||||||| | ||||||||||||||||||||      |||||||||||    
T  29689277 agttttaattgcatgatttattagttcacttcctatttttcagtcaaacctccttgaattatagcaaatagtgcattgtgatt------tgctctttatt 29689370  T
Q  490 cttgaagaattctcgatgatatttttctagagatataa 527  Q
    ||| || |||||| |||| |||||||||||||||||||    
T  29689371 cttaaaaaattcttgatgttatttttctagagatataa 29689408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 405 - 529
Target Start/End: Original strand, 35676349 - 35676470
Alignment:
Q  405 atttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcg 504  Q
    ||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||| |||    ||||||||||||||| ||||||||| |    
T  35676349 atttatttgttcacttcatatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttg---actgctctttattcttaaagaattcttg 35676445  T
Q  505 atgatatttttctagagatataaca 529  Q
    ||| ||||||| |||||||||||||    
T  35676446 atgttatttttttagagatataaca 35676470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 380 - 518
Target Start/End: Original strand, 35323522 - 35323657
Alignment:
Q  380 acagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgct 479  Q
    |||||||||||||||||||| |||||||||  |||||| |   ||||||||||||||||||| |||||||||||||||||||| ||||||||||    ||    
T  35323522 acagttgacaagttttaattacatgatttatatgttcagtttttatttttcagccacacctcattgaattgtggcaaatagtgtattgtgattg---act 35323618  T
Q  480 gctctttattcttgaagaattctcgatgatatttttcta 518  Q
    | ||||||||||||||||||| | |||| ||||||||||    
T  35323619 gttctttattcttgaagaatttttgatgttatttttcta 35323657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 392 - 532
Target Start/End: Original strand, 2752692 - 2752829
Alignment:
Q  392 ttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattct 491  Q
    ||||||||| |||||||| || |||||| | |||||||||| || | |||||||||||||||||||||||||||||||||||   |||||| ||| ||||    
T  2752692 ttttaattgtatgatttatttattcacttcttatttttcagtcagatctccttgaattgtggcaaatagtgcattgtgattg---gctgctattttttct 2752788  T
Q  492 tgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||  ||| |||||||||||| ||||| |||||    
T  2752789 tgaagaattcttaatgttatttttctagaaatatatcattg 2752829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 429 - 532
Target Start/End: Original strand, 28716435 - 28716535
Alignment:
Q  429 tcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataac 528  Q
    ||||||||||||| |||||||||||||||||||||||||||||   | ||| || ||||||||||||||||||| ||||  |||||||||||||||||||    
T  28716435 tcagccacacctctttgaattgtggcaaatagtgcattgtgat---cggctactatttattcttgaagaattcttgatgtcatttttctagagatataac 28716531  T
Q  529 attg 532  Q
    ||||    
T  28716532 attg 28716535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 28716341 - 28716435
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgt 451  Q
    |||||||||||||| ||||||| |||  || |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  28716341 tagcatcaagaatttttcaagacacaactggcaagttttaattgcattatttatttgttcacttcctatttttcagccacacctctttgaattgt 28716435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 423 - 531
Target Start/End: Original strand, 23454350 - 23454456
Alignment:
Q  423 tatttttcagccacacctccttgaattgtggcaaat-agtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagag 521  Q
    |||||||||| | ||||||||||||||||| ||||| ||||||||||||||| ||||   ||||||||||||||||||| |  ||| |||||||||||||    
T  23454350 tatttttcagtcgcacctccttgaattgtgtcaaattagtgcattgtgattgactgc---tctttattcttgaagaattttttatgttatttttctagag 23454446  T
Q  522 atataacatt 531  Q
    ||||| ||||    
T  23454447 atatagcatt 23454456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 532
Target Start/End: Original strand, 16058426 - 16058569
Alignment:
Q  387 acaagttttaattgcatgatttaattgttcactccctatttttcagccacac--ctccttgaattgtggcaaatagtgcattgtgattggctgctgctct 484  Q
    |||||||||| |||||||||||| || |||||| | ||||||||||||||||  |||||||||||||| ||||| || |||| | || |    || ||||    
T  16058426 acaagttttatttgcatgatttatttattcacttcatatttttcagccacacaactccttgaattgtgacaaat-gttcattattatag---actactct 16058521  T
Q  485 ttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||||||||  ||| |||||||||||||||||| |||||    
T  16058522 ttattcttgaagaattcttaatgttatttttctagagatatagcattg 16058569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 532
Target Start/End: Original strand, 36690860 - 36691016
Alignment:
Q  372 ttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgat 471  Q
    ||||||| |||| |||||| |||||||| | ||||||| ||||||||| |||| ||| ||||||| | |||||||||||||||||||| || ||| | ||    
T  36690860 ttcaagacacagctgacaaattttaattacttgatttatttgttcacttcctacttt-cagccacgcttccttgaattgtggcaaatactgtattataat 36690958  T
Q  472 tggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||   | || | |||||| |||||||||| | |||| ||| ||| ||||||||||||||||    
T  36690959 tg---gatgttttttatttttgaagaatttttgatgttatatttttagagatataacattg 36691016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 357 - 494
Target Start/End: Original strand, 40126524 - 40126658
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    ||||||| |||||| || ||||||||| | |||| ||||||||| |||||||| ||||||||| ||||||||||| | | | || ||| |||||||  ||    
T  40126524 tagcatcgagaattttttaagatacagctcacaaattttaattgtatgatttatttgttcacttcctatttttcaactatatcttcttaaattgtgataa 40126623  T
Q  457 atagtgcattgtgattggctgctgctctttattcttga 494  Q
    |||||||||| ||| ||    |||||||||||||||||    
T  40126624 atagtgcattatgaatg---actgctctttattcttga 40126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 361 - 532
Target Start/End: Complemental strand, 24683247 - 24683079
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||||||||| ||||||| ||| |||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||| | |||||||||||||||||    
T  24683247 atcaagaatttttcaagacacacttgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacaccttcctgaattgtggcaaatag 24683148  T
Q  461 tgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||   |||||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  24683147 tgcattgtgattggc---tgctctttattcttgaagaattcttgatgttatttttctagagatatagcattg 24683079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 357 - 532
Target Start/End: Original strand, 18375415 - 18375586
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| |||  || |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  18375415 tagcatcaagaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttcctatttt-cagccacacctccttgaattgtggcaa 18375513  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||    | || |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  18375514 atagtgcattgtgattg---accgcactttattcttgaagaattcttgatgttatttttctagagatataacattg 18375586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 41633391 - 41633220
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| | || |||||| |||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  41633391 tagcatcaagaatttttcaagacaaagctgacaaattttaattacat-atttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 41633293  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
     ||||||||||||||||||   ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  41633292 gtagtgcattgtgattggc---tgctctttattcttgaagaattcttaatgttatttttctagagatataacattg 41633220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 361 - 532
Target Start/End: Original strand, 26179238 - 26179406
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||||||||| || || | |||| || ||||||| ||||  |||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||    
T  26179238 atcaagaattttttaaaacacagctgtcaagtttcaatttgatgatttatttgttcacttcctatttttcagccacacctccttgaattgtgttaaatag 26179337  T
Q  461 tgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||| ||||||||   ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  26179338 tgcactgtgattg---gctgctctttattcttgaagaattcttaatgttatttttctagagatataacattg 26179406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 357 - 477
Target Start/End: Complemental strand, 54358287 - 54358167
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| | ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||    
T  54358287 tagcatcaagaatttttcaagacatagttggcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacccccttaaattgtggcaa 54358188  T
Q  457 atagtgcattgtgattggctg 477  Q
    |||||||||||||||||||||    
T  54358187 atagtgcattgtgattggctg 54358167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 521
Target Start/End: Original strand, 37674024 - 37674185
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| ||   ||||||||||||||||||||||||| ||||| |||   ||||||||||||||||||| ||||||||| | ||    
T  37674024 tagcatcaagaatttttcaagacacgtgtgacaagttttaattgcatgatttatttgttaactttttatttttcagccacacctctttgaattgtagtaa 37674123  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagag 521  Q
    ||||| |||||||||||    |||||||||| |||||||||||||| |||| |||||||||||||    
T  37674124 atagtacattgtgattg---actgctctttagtcttgaagaattcttgatgttatttttctagag 37674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 389 - 532
Target Start/End: Original strand, 47281588 - 47281732
Alignment:
Q  389 aagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttga----attgtggcaaatagtgcattgtgattggctgctgctct 484  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    | ||||||||||||||||||||||||   ||  | |||    
T  47281588 aagttttaattgcatgatttatttgttcacttcctatttttcaaccacacctccttgaaattaatgtggcaaatagtgcattgtgatt---tgtcgttct 47281684  T
Q  485 ttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||||    
T  47281685 ttattcttgaagaattcttgatgttatttttctagacatataacattg 47281732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 357 - 532
Target Start/End: Original strand, 17847566 - 17847733
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||  ||||||||| | |||||||||||||||||||||      
T  17847566 tagcatcaagaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcactttctatttttctgtcacacctccttgaattgtggc-- 17847663  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
       ||||||| ||||||    ||||| |||| |||||||||||| |  ||| |||||||||||||||||| |||||    
T  17847664 ---gtgcattatgattg---actgctttttaatcttgaagaattttttatgttatttttctagagatatagcattg 17847733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 357 - 479
Target Start/End: Original strand, 4512187 - 4512309
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||| |  ||| || |||||||||||||||| ||||| ||||| ||| |||||||||||| |||| ||||||||||||||||||    
T  4512187 tagcatcaagaatttttcaatactcaggtggcaagttttaattgcatcatttatttgtttacttcctatttttcagtcacatctccttgaattgtggcaa 4512286  T
Q  457 atagtgcattgtgattggctgct 479  Q
    |||||  |||||||||| |||||    
T  4512287 atagtatattgtgattgactgct 4512309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 357 - 473
Target Start/End: Original strand, 23348137 - 23348256
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccct---atttttcagccacacctccttgaattgtgg 453  Q
    ||||||||| |||| ||||||| |||   |||||||||||||||||||||||| ||||||||| |||   |||||||||||||||||||||||||| |||    
T  23348137 tagcatcaataatttttcaagaaacaaccgacaagttttaattgcatgatttatttgttcacttcctcctatttttcagccacacctccttgaattatgg 23348236  T
Q  454 caaatagtgcattgtgattg 473  Q
     |||||||| ||||||||||    
T  23348237 taaatagtgtattgtgattg 23348256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 456
Target Start/End: Complemental strand, 41878691 - 41878592
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| | |  ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||  ||||||||||||||    
T  41878691 tagcatcaagaatttttcaagacataactgacaagttttaattgcatgatttatttgtttacttcctatttttcagccacaccttattgaattgtggcaa 41878592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 479
Target Start/End: Original strand, 54021266 - 54021391
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgca---tgatttaattgttcactccctatttttcagccacacctccttgaattgtgg 453  Q
    |||||||||||||| || |||||| || |||||||||||||||      || |||| ||||| |||  |||||||||| |||||||||||| ||||||||    
T  54021266 tagcatcaagaattttttaagataaagctgacaagttttaatttttaattgctttatttgtttactttctatttttcaaccacacctccttaaattgtgg 54021365  T
Q  454 caaatagtgcattgtgattggctgct 479  Q
    || |||||||||||||||||||||||    
T  54021366 cacatagtgcattgtgattggctgct 54021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 496
Target Start/End: Original strand, 47838967 - 47839102
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| |||| ||   || |||||||||||||| |  ||||||| |  ||||||||| ||||||||||||| |||||||||||    
T  47838967 tagcatcaagaatt-ttcaagacacagctggtgagatttaattgcatgatgtttttgttcattttctatttttcggccacacctccttaaattgtggcaa 47839065  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaag 496  Q
    ||||| ||||||| |||    |||||||||||||||||||    
T  47839066 atagtacattgtggttg---actgctctttattcttgaag 47839102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 41878406 - 41878324
Alignment:
Q  447 attgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||| |||||||||||||||||||||   |||| ||||||||| ||||||||||  |||| |||||||||| ||||| |||||||    
T  41878406 attgtagcaaatagtgcattgtgattg---gctgatctttattcatgaagaattcatgatgttatttttctatagatacaacattg 41878324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 4098532 - 4098577
Alignment:
Q  487 attcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  4098532 attcttgaagaattcttgatgttatttttctagagatataacattg 4098577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 41497915 - 41497977
Alignment:
Q  357 tagcatcaagaattcttcaagataca--gttgacaagttttaattgcatgatttaattgttca 417  Q
    ||||||||| |||| ||||||| |||  ||||| ||||||||||||||||||||| |||||||    
T  41497915 tagcatcaaaaattattcaagacacacagttgataagttttaattgcatgatttatttgttca 41497977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 361 - 532
Target Start/End: Original strand, 23991978 - 23992146
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||||||||| ||||||| |||  |||||||||||||||||||||| |  |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23991978 atcaagaatttttcaagacacaactgacaagttttaattgcatgatatttttgttcactttctatttttcagccacacctccttgaattgtggcaaatag 23992077  T
Q  461 tgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||| |   |||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||    
T  23992078 tgcattgtgatag---gctgctctttattcttgaagaattcttgatgttatatttgtagagatataacattg 23992146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 357 - 536
Target Start/End: Original strand, 27425777 - 27425953
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    ||||||||| |||| ||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  27425777 tagcatcaacaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcacttcctatttttcaaccacaactccttgaattgtggcaa 27425876  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattgttta 536  Q
    ||| |||||||||||||    ||| ||||||||||| ||||||||| |||| |||||||||| ||||||| |||||||||    
T  27425877 ataatgcattgtgattg---actgttctttattctttaagaattcttgatgttatttttctaaagatatagcattgttta 27425953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 389 - 526
Target Start/End: Complemental strand, 22327001 - 22326867
Alignment:
Q  389 aagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttat 488  Q
    ||||||||||||||||||||| |||||||||  ||||||||||| ||||||||| |||||||||||||||||| |||||||||||    | ||||||| |    
T  22327001 aagttttaattgcatgatttatttgttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattg---acggctctttct 22326905  T
Q  489 tcttgaagaattctcgatgatatttttctagagatata 526  Q
    |||||||||||||| |||| |||||||||| |||||||    
T  22326904 tcttgaagaattcttgatgttatttttctaaagatata 22326867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 532
Target Start/End: Complemental strand, 17611989 - 17611845
Alignment:
Q  385 tgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctct 484  Q
    |||||||||||||||| |||||||| || |||||| ||||||||| ||||||| ||||||||||||||||||||| | |||| ||||||   | || |||    
T  17611989 tgacaagttttaattgtatgatttatttattcacttcctattttttagccacatctccttgaattgtggcaaataattcattatgattg---gttgttct 17611893  T
Q  485 ttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||| |||| ||||||||||| |||||| |||||    
T  17611892 ttattcttgaagaattcttgatgttatttttctagcgatatagcattg 17611845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 360 - 472
Target Start/End: Complemental strand, 42195549 - 42195437
Alignment:
Q  360 catcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaata 459  Q
    ||||||||||| || ||||||||  | | ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  42195549 catcaagaattttttaagatacaactaaaaagttttaattgcatgatttatttgttcactccttatttttcagacacacctccttgaattgtggtaaata 42195450  T
Q  460 gtgcattgtgatt 472  Q
    |||||||| ||||    
T  42195449 gtgcattgagatt 42195437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 520
Target Start/End: Complemental strand, 8307687 - 8307540
Alignment:
Q  367 aattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcatt 466  Q
    |||| ||||||| |||  || ||| |||||| ||||||||||| ||||||||| ||||||||| |||||||   |||||||||||||| |||||||||||    
T  8307687 aatttttcaagacacaactggcaaattttaactgcatgatttatttgttcacttcctatttttgagccaca---ccttgaattgtggctaatagtgcatt 8307591  T
Q  467 gtgattggctgctgctctttattcttgaagaattctcgatgatatttttctaga 520  Q
     ||||||    ||  ||||||||||| || |||||| |||| ||||||||||||    
T  8307590 atgattg---actcgtctttattcttaaaaaattcttgatgttatttttctaga 8307540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 41405803 - 41405851
Alignment:
Q  422 ctatttttcagccacacctccttgaattgtggcaaatagtgcattgtga 470  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  41405803 ctatttttcaaccatacctccttgtattgtggcaaatagtgcattgtga 41405851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 25686514 - 25686424
Alignment:
Q  386 gacaagttttaattgcatgatt--taatt-gttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattg 473  Q
    |||||||||| |||| ||||||  ||||| ||| ||| |||||||| ||||||||||||||| |||||||| ||||||| |||| ||||||    
T  25686514 gacaagttttgattgtatgattattaatttgtttacttcctattttccagccacacctccttaaattgtggtaaatagtacattatgattg 25686424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Complemental strand, 19479495 - 19479444
Alignment:
Q  481 ctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||| |||||||||| | |||| |||||||||||||||||| |||||    
T  19479495 ctctttatttttgaagaatttttgatgttatttttctagagatatagcattg 19479444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 388 - 534
Target Start/End: Complemental strand, 492810 - 492667
Alignment:
Q  388 caagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctcttta 487  Q
    |||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||   |||||||||    
T  492810 caagttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggc---tgctcttta 492714  T
Q  488 ttcttgaagaattctcgatgatatttttctagagatataacattgtt 534  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  492713 ttcttgaagaattcttgatgttatttttctagagatataacattgtt 492667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 361 - 526
Target Start/End: Original strand, 7646802 - 7646964
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||| ||||| ||||||| |||  || |||||||||||||||||||||| ||||||| | |||||||||||| ||||| |||||||||||||||||||||    
T  7646802 atcaggaatttttcaagacacatctggcaagttttaattgcatgatttatttgttcatttcctatttttcagtcacacatccttgaattgtggcaaatag 7646901  T
Q  461 tgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    |||||||||||||   ||||||||||||| || ||||||||| |||| ||||||||||||||||||    
T  7646902 tgcattgtgattg---gctgctctttatttttaaagaattcttgatgttatttttctagagatata 7646964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 357 - 531
Target Start/End: Complemental strand, 25935683 - 25935512
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| |||| || |||||||||||| ||||||||| |  ||||||  ||||||||||||||||||||||| ||||||| |||    
T  25935683 tagcatcaagaatttttcaagacacagctggcaagttttaattacatgatttattctttcactttctatttttcagccacacctccttaaattgtgacaa 25935584  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||||| |||| |||||    | ||||||||||||||||| ||||||  ||| |||||||||||||||||||||||    
T  25935583 atagtacattatgatt---agatgctctttattcttgaataattcttaatgttatttttctagagatataacatt 25935512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 29487541 - 29487655
Alignment:
Q  359 gcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaat 458  Q
    |||||||||||| ||| ||| |||||||  |||| || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||    
T  29487541 gcatcaagaatttttccagacacagttggtaagtgttgattgcatgatttatttgttcactccctatttttcagccacacctcatttaattgtggcaaat 29487640  T
Q  459 agtgcattgtgattg 473  Q
    |||||| ||||||||    
T  29487641 agtgcaatgtgattg 29487655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 396 - 502
Target Start/End: Original strand, 12607123 - 12607226
Alignment:
Q  396 aattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaa 495  Q
    |||||||||||||| |||||||||  ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||    ||||||||||||||||||    
T  12607123 aattgcatgatttatttgttcactttctatttttcagtcacacctccttaaattgtggcaaatagtgcactgtgattg---actgctctttattcttgaa 12607219  T
Q  496 gaattct 502  Q
    |||||||    
T  12607220 gaattct 12607226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 28898429 - 28898482
Alignment:
Q  380 acagttgacaagttttaattgcatgatttaattgttcactccctatttttcagc 433  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||| ||||    
T  28898429 acagttaaaaagttttaattgcatgatttatttgttcactccctattttacagc 28898482  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 532
Target Start/End: Complemental strand, 17366929 - 17366853
Alignment:
Q  453 gcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||| ||||||| |||| |   ||||||||||||| ||||||  ||| | |||||||||||||||| |||||    
T  17366929 gcaaatagtgcagtgtgattagctgtt---ctttattcttgaaaaattcttaatgttgtttttctagagatatagcattg 17366853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 479
Target Start/End: Complemental strand, 29637081 - 29637008
Alignment:
Q  406 tttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgct 479  Q
    |||| |||||||||  ||||||||||||   ||||||||| |||||||||||||||   ||||||||| |||||    
T  29637081 tttatttgttcactttctatttttcagctttacctccttgtattgtggcaaatagttagttgtgattgactgct 29637008  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 28898504 - 28898552
Alignment:
Q  478 ctgctctttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    ||||||||||||||||||||||||  |||| | |||||||||| |||||    
T  28898504 ctgctctttattcttgaagaattcgtgatgctctttttctagatatata 28898552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 41322704 - 41322532
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||| | ||||  |||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||||||| |  |||    
T  41322704 tagcatcaagaatttttcaagacatagttagcaagttttaattgcatgatttaattgttaacttcctatttttctaccacacctccttgaattttcacaa 41322605  T
Q  457 atagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||||||||||||    ||||||||||||||||||||||||| |||| ||||||| || ||||||| |||||    
T  41322604 atagtgcattgtgattg---actgctctttattcttgaagaattcttgatgttatttttttaaagatatagcattg 41322532  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 15561938 - 15562047
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaa 456  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  15561938 tagcatcaagaatttttcaagatacagttggcaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 15562037  T
Q  457 atagtgcatt 466  Q
    ||| ||||||    
T  15562038 ataatgcatt 15562047  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 361 - 526
Target Start/End: Complemental strand, 29314170 - 29314008
Alignment:
Q  361 atcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatag 460  Q
    |||||||||| ||||||| |||||||  ||||||||||||||| ||||| |||| ||||  ||||||||||| ||||||||||| |||||||||||||||    
T  29314170 atcaagaatttttcaagacacagttggtaagttttaattgcattatttatttgtccactttctatttttcagtcacacctccttaaattgtggcaaatag 29314071  T
Q  461 tgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagatata 526  Q
    |||||||||||||    || |||||||||||| || |||||| |||| ||||||||||||||||||    
T  29314070 tgcattgtgattg---acttctctttattcttaaacaattcttgatgttatttttctagagatata 29314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 360 - 513
Target Start/End: Original strand, 36473076 - 36473226
Alignment:
Q  360 catcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaata 459  Q
    ||||||||||| ||||||| ||| |||  ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||    
T  36473076 catcaagaatttttcaagacacaattggtaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttaaattgtgtcaaata 36473175  T
Q  460 gtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatattt 513  Q
    ||| | ||||||||    ||||||||||||||||||||||||| |||| |||||    
T  36473176 gtgtactgtgattg---actgctctttattcttgaagaattcttgatgttattt 36473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 372 - 525
Target Start/End: Complemental strand, 39112808 - 39112658
Alignment:
Q  372 ttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgat 471  Q
    ||||||| ||| ||| ||| ||||||||| |||||||| |||||||||  ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  39112808 ttcaagacacaattggcaaattttaattggatgatttatttgttcactttctatttttcagccgcacctccttgaattatggcaaatagtgcattgtgat 39112709  T
Q  472 tggctgctgctctttattcttgaagaattctcgatgatatttttctagagatat 525  Q
    ||   | ||||||||||| |||||||||||| |||| |||||||||||||||||    
T  39112708 tg---gttgctctttatttttgaagaattcttgatgttatttttctagagatat 39112658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 380 - 532
Target Start/End: Complemental strand, 4851885 - 4851736
Alignment:
Q  380 acagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgct 479  Q
    |||| ||||||||||||||||||||||||| ||||| | | |||||||||||||||||| ||||| |||||||| |||||||||||| ||||||    ||    
T  4851885 acagctgacaagttttaattgcatgatttatttgtttatttcctatttttcagccacacttccttaaattgtggaaaatagtgcattatgattg---act 4851789  T
Q  480 gctctttattcttgaagaattctcgatgatatttttctagagatataacattg 532  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||| |||||    
T  4851788 gctctttattcttaaaaaattcttgatgttatttttctagagatatagcattg 4851736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 360 - 516
Target Start/End: Original strand, 11653738 - 11653894
Alignment:
Q  360 catcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaata 459  Q
    ||||||||||| || |||| || | ||||||||||||||| ||||||||| |||||||||  || ||||| |||||||| ||||||||||||||||||||    
T  11653738 catcaagaattttttaagacacggctgacaagttttaattacatgatttatttgttcacttact-tttttaagccacacatccttgaattgtggcaaata 11653836  T
Q  460 gtgcattgtgattggctg-ctgctctttattcttgaagaattctcgatgatatttttc 516  Q
    || |||| ||||||  || ||||||||||||||||||||||||| |||| ||||||||    
T  11653837 gtacattatgattgattgactgctctttattcttgaagaattcttgatgttatttttc 11653894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 389 - 531
Target Start/End: Complemental strand, 34392251 - 34392112
Alignment:
Q  389 aagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttat 488  Q
    ||||||||||||||||||||| |||||||||    ||||||||||||||||| ||| |||||||||||||||| |||||||||||     ||||||||||    
T  34392251 aagttttaattgcatgatttatttgttcacttttcatttttcagccacaccttcttaaattgtggcaaatagtacattgtgattg---agtgctctttat 34392155  T
Q  489 tcttgaagaattctcgatgatatttttctagagatataacatt 531  Q
    ||||||| |||||| |||| ||||||| |||||||||| ||||    
T  34392154 tcttgaaaaattcttgatgttatttttttagagatatagcatt 34392112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 372 - 502
Target Start/End: Complemental strand, 2001807 - 2001681
Alignment:
Q  372 ttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgat 471  Q
    ||||||| |||| || |||||||||||| ||||||||| |||||||||  ||||||| ||||||||||||||| ||||||||||||| ||| ||| ||||    
T  2001807 ttcaagacacagctgccaagttttaattacatgatttatttgttcactatctattttccagccacacctccttaaattgtggcaaatcgtgtatt-tgat 2001709  T
Q  472 tggctgctgctctttattcttgaagaattct 502  Q
    ||    |||||||||||||||||||||||||    
T  2001708 tg---actgctctttattcttgaagaattct 2001681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 385 - 528
Target Start/End: Complemental strand, 1005736 - 1005596
Alignment:
Q  385 tgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctct 484  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||| || ||||||| ||||| ||||||| | ||||     | ||||    
T  1005736 tgacaagttttaattgcataatttatttgttcacttcctatttttcagtcacacctctttaaattgtgtcaaatggtgcattataattg---attactct 1005640  T
Q  485 ttattcttgaagaattctcgatgatatttttctagagatataac 528  Q
    |||||||| ||||||| |  ||  ||||||||||||||||||||    
T  1005639 ttattctttaagaatttttaatattatttttctagagatataac 1005596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 33889023 - 33888946
Alignment:
Q  357 tagcatcaagaattcttcaagatacagttgacaagttttaattgcatgatttaattgttcactccctatttttcagcc 434  Q
    |||||||||||||| ||||||| |||  ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  33889023 tagcatcaagaatttttcaagaaacaactgacaagttttaattgcataatttatttgttcactccctatttttcagcc 33888946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 396 - 532
Target Start/End: Complemental strand, 8551625 - 8551492
Alignment:
Q  396 aattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaa 495  Q
    |||||||||||||| ||||||| |  |||||||| | ||||| |||||| |||||||||||| | |||||||||||||   | || |||||||||| |||    
T  8551625 aattgcatgatttatttgttcattttctattttttaaccacatctcctttaattgtggcaaacaatgcattgtgattg---gttgttctttattctcgaa 8551529  T
Q  496 gaattctcgatgatatttttctagagatataacattg 532  Q
    |||||||  ||| ||||||| |||||||||| |||||    
T  8551528 gaattcttaatgttatttttttagagatatagcattg 8551492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 494
Target Start/End: Complemental strand, 11643423 - 11643324
Alignment:
Q  392 ttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattct 491  Q
    ||||||||| |||||||| ||||||||| | ||||||||| | |||| | ||| |||||||| |||||||||||||||||||    ||||||||||||||    
T  11643423 ttttaattgtatgatttatttgttcacttcgtatttttcaactacactttcttaaattgtggtaaatagtgcattgtgattg---actgctctttattct 11643327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 479
Target Start/End: Complemental strand, 4794243 - 4794174
Alignment:
Q  410 attgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgct 479  Q
    |||||||||| |||||||||  |||| |||||| |  |||||||||||||||||||||||||||||||||    
T  4794243 attgttcacttcctattttttggccaaacctccatatattgtggcaaatagtgcattgtgattggctgct 4794174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 498
Target Start/End: Complemental strand, 5549087 - 5548972
Alignment:
Q  380 acagttgacaagttttaattgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgct 479  Q
    ||||||| |||| | ||||||||||||||| |||||||||||||||| |||||  ||||| || || ||| |||||| || || ||| ||||||    ||    
T  5549087 acagttgtcaaggtataattgcatgatttatttgttcactccctattgttcagggacaccaccgtgtattatggcaagtactgaattatgattg---act 5548991  T
Q  480 gctctttattcttgaagaa 498  Q
    |||||||||||||||||||    
T  5548990 gctctttattcttgaagaa 5548972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 37919603 - 37919679
Alignment:
Q  397 attgcatgatttaattgttcactccctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattg 473  Q
    ||||||||||||| |||||||||  ||||||||||  |||| |||||| ||||||| |||||| |||||||||||||    
T  37919603 attgcatgatttatttgttcacttactatttttcactcacatctccttaaattgtgacaaataatgcattgtgattg 37919679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 425 - 526
Target Start/End: Complemental strand, 642 - 545
Alignment:
Q  425 tttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagata 524  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||   |||||||||||||||||||| |||| ||||||| || |||||    
T  642 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgct---ctttattcttgaagaattcttgatgttatttttttatagata 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 425 - 526
Target Start/End: Complemental strand, 8602 - 8505
Alignment:
Q  425 tttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctgctctttattcttgaagaattctcgatgatatttttctagagata 524  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||   |||||||||||||||||||| |||| ||||||| || |||||    
T  8602 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgct---ctttattcttgaagaattcttgatgttatttttttatagata 8507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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