View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_high_49 (Length: 251)

Name: NF19409_high_49
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_high_49
NF19409_high_49
[»] chr2 (7 HSPs)
chr2 (16-239)||(2320194-2320417)
chr2 (16-233)||(2309205-2309422)
chr2 (15-241)||(2292873-2293099)
chr2 (16-241)||(2302493-2302718)
chr2 (16-224)||(2326048-2326256)
chr2 (61-241)||(2329808-2329988)
chr2 (32-241)||(2350079-2350288)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 2320194 - 2320417
Alignment:
Q  16 ttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttc 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2320194 ttcacaaccaccgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttc 2320293  T
Q  116 tcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttct 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320294 tcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttct 2320393  T
Q  216 cgttcaaaactcagccatcttctc 239  Q
    ||||||||||||||||||||||||    
T  2320394 cgttcaaaactcagccatcttctc 2320417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 2309205 - 2309422
Alignment:
Q  16 ttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2309205 ttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttc 2309304  T
Q  116 tcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttct 215  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2309305 tcaaaactctccatgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttct 2309404  T
Q  216 cgttcaaaactcagccat 233  Q
    ||||||||||||||||||    
T  2309405 cgttcaaaactcagccat 2309422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 2292873 - 2293099
Alignment:
Q  15 attcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaacctttt 114  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2292873 attcacaaccaccatacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaacctttt 2292972  T
Q  115 ctcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttc 214  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  2292973 ctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttc 2293072  T
Q  215 tcgttcaaaactcagccatcttctctg 241  Q
    |||||||||||||| ||||||||||||    
T  2293073 tcgttcaaaactcatccatcttctctg 2293099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 2302493 - 2302718
Alignment:
Q  16 ttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttc 115  Q
    ||||||||||| |||||| ||||||| ||||||| ||||||||||||| |||||||  | || ||||||| |||| ||  ||||||||||||||||||||    
T  2302493 ttcacaaccaccgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttc 2302592  T
Q  116 tcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttct 215  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||    
T  2302593 tcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttct 2302692  T
Q  216 cgttcaaaactcagccatcttctctg 241  Q
    |||||||||||||| ||||| |||||    
T  2302693 cgttcaaaactcagacatctactctg 2302718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 2326048 - 2326256
Alignment:
Q  16 ttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttc 115  Q
    ||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||   | |||| ||||| ||||||| | |||||||||||||||||||    
T  2326048 ttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttc 2326147  T
Q  116 tcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttct 215  Q
    |||||||||||||||| ||||||||||||||||||| | |  ||||||| ||  |||||||||||| ||||  ||||| ||||||||| ||||| |  ||    
T  2326148 tcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccct 2326247  T
Q  216 cgttcaaaa 224  Q
    |||||||||    
T  2326248 cgttcaaaa 2326256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 2329808 - 2329988
Alignment:
Q  61 atcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgtccata 160  Q
    ||||||||||   |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| | |  |||    
T  2329808 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 2329907  T
Q  161 tcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctctg 241  Q
    ||||||||||||||||||||||||||  ||||| ||||||||| ||||| | |||||||||||||||  || |||||||||    
T  2329908 tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg 2329988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 2350079 - 2350288
Alignment:
Q  32 ccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgc 131  Q
    ||||||||||||| || |  || |||||||| |||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  |    
T  2350079 ccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacac 2350178  T
Q  132 taaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagcc 231  Q
     ||| ||||||||||||||||| || | ||| |||  ||||||||||||||||||  ||||||| |||| || ||||| | |||||||||||||||||||    
T  2350179 caaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagcc 2350278  T
Q  232 atcttctctg 241  Q
    ||||||||||    
T  2350279 atcttctctg 2350288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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