View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_high_52 (Length: 250)

Name: NF19409_high_52
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_high_52
NF19409_high_52
[»] chr4 (7 HSPs)
chr4 (1-237)||(51531356-51531587)
chr4 (148-202)||(35663941-35663995)
chr4 (148-202)||(41594681-41594735)
chr4 (156-210)||(43095262-43095316)
chr4 (152-232)||(23226022-23226102)
chr4 (155-228)||(25455392-25455465)
chr4 (148-236)||(51545539-51545627)
[»] chr5 (1 HSPs)
chr5 (162-236)||(3346908-3346982)
[»] chr1 (2 HSPs)
chr1 (148-202)||(16448157-16448211)
chr1 (156-208)||(31784768-31784820)
[»] scaffold0003 (1 HSPs)
scaffold0003 (155-220)||(312752-312817)
[»] chr7 (1 HSPs)
chr7 (148-177)||(7269479-7269508)
[»] scaffold0034 (1 HSPs)
scaffold0034 (155-219)||(94968-95032)
[»] chr6 (1 HSPs)
chr6 (155-203)||(31323852-31323900)
[»] chr2 (2 HSPs)
chr2 (152-200)||(20900695-20900743)
chr2 (150-202)||(20900713-20900765)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 51531356 - 51531587
Alignment:
Q  1 cagttatacataaaatgttgaaaaagaacaaatcggtggttgtgatatttaataacttttgttttgcctcagtagggccttattattgtaaacattaatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       
T  51531356 cagttatacataaa-tgttgaaaaagaacaaatcggtggttgtgatatttaataacttttgttttacctcagtagggccttattattgtaaacatta--- 51531451  T
Q  101 aactgacataatgcatgccatctaactaagtgctactccgattttacaaagttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatac 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  51531452 -actgacataatgcatgccatctaactaagtgctactccgattttataaaattgggtcaacaaaaattgatgtatttggtccaaattttgaacaagatac 51531550  T
Q  201 attcatttttattaatcaaactttctcttatatatat 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  51531551 attcatttttattaatcaaactttctcttatatatat 51531587  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 35663941 - 35663995
Alignment:
Q  148 aaagttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacat 202  Q
    |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  35663941 aaagttgggtaaacaaaaattgatgtatctggtccaaattttgaaccagatacat 35663995  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 41594681 - 41594735
Alignment:
Q  148 aaagttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacat 202  Q
    |||||||||||||||||| ||||||||| || |||||||||||||| ||||||||    
T  41594681 aaagttgggtcaacaaaagttgatgtatatggtccaaattttgaaccagatacat 41594735  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 43095316 - 43095262
Alignment:
Q  156 gtcaacaaaaattgatgtatctgttccaaattttgaacaagatacattcattttt 210  Q
    ||||||||||||| ||||||||| |||||||||||||| | ||||||| ||||||    
T  43095316 gtcaacaaaaattaatgtatctggtccaaattttgaaccatatacattaattttt 43095262  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 23226102 - 23226022
Alignment:
Q  152 ttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacattcatttttattaatcaaactttctcttata 232  Q
    |||||||||||||| || ||||||||| ||||||||||||||  |||||||  |||||| || ||| || | |||||||||    
T  23226102 ttgggtcaacaaaagtttatgtatctgatccaaattttgaactggatacatcaatttttgttgatctaaatatctcttata 23226022  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 25455392 - 25455465
Alignment:
Q  155 ggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacattcatttttattaatcaaactttctct 228  Q
    ||||||||||| |||||| ||||| |||||||||| ||| || |||||  |||||| || ||| ||||||||||    
T  25455392 ggtcaacaaaagttgatgcatctggtccaaattttaaaccaggtacatcaatttttgttgatccaactttctct 25455465  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 51545539 - 51545627
Alignment:
Q  148 aaagttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacattcatttttattaatcaaactttctcttatatata 236  Q
    |||||| ||| ||||||| |||||||||| | || ||||||||||| |  |||||| | |||| || ||| |||||| |||||||||||    
T  51545539 aaagtttggtgaacaaaagttgatgtatcagctcaaaattttgaaccacgtacattaacttttgttgatctaactttatcttatatata 51545627  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 3346982 - 3346908
Alignment:
Q  162 aaaaattgatgtatctgttccaaattttgaacaagatacattcatttttattaatcaaactttctcttatatata 236  Q
    ||||||||||||||||| |||||||||| ||| || |||||  | |||| || |  |||||||||||||||||||    
T  3346982 aaaaattgatgtatctgatccaaattttaaactaggtacatcaacttttgttgacgaaactttctcttatatata 3346908  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 16448211 - 16448157
Alignment:
Q  148 aaagttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacat 202  Q
    |||||||||||||||||| ||||||||||||  |  |||||||||| ||||||||    
T  16448211 aaagttgggtcaacaaaagttgatgtatctggactgaattttgaaccagatacat 16448157  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 31784820 - 31784768
Alignment:
Q  156 gtcaacaaaaattgatgtatctgttccaaattttgaacaagatacattcattt 208  Q
    ||||||| || |||||||||||  | |||||||||||||| ||||||||||||    
T  31784820 gtcaacataagttgatgtatctaatacaaattttgaacaaaatacattcattt 31784768  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 312752 - 312817
Alignment:
Q  155 ggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacattcatttttattaatcaaa 220  Q
    ||||||||||| || ||||||||| |||||||||| ||| ||||||||  |||||| || ||||||    
T  312752 ggtcaacaaaagttaatgtatctgatccaaattttaaactagatacatcaatttttgttgatcaaa 312817  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 7269508 - 7269479
Alignment:
Q  148 aaagttgggtcaacaaaaattgatgtatct 177  Q
    ||||||||||||||||||||||||||||||    
T  7269508 aaagttgggtcaacaaaaattgatgtatct 7269479  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 95032 - 94968
Alignment:
Q  155 ggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacattcatttttattaatcaa 219  Q
    |||||||| || ||||||||| || | |||||||||||||  ||||||| ||||||||| |||||    
T  95032 ggtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttattgatcaa 94968  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 31323900 - 31323852
Alignment:
Q  155 ggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacatt 203  Q
    |||||||| || |||||||||||| | |||||||||||||| |||||||    
T  31323900 ggtcaacataagttgatgtatctggtacaaattttgaacaaaatacatt 31323852  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 20900695 - 20900743
Alignment:
Q  152 ttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatac 200  Q
    |||||||| ||||| |||||||||||  |||||||||||||| ||||||    
T  20900695 ttgggtcagcaaaagttgatgtatcttgtccaaattttgaaccagatac 20900743  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 20900765 - 20900713
Alignment:
Q  150 agttgggtcaacaaaaattgatgtatctgttccaaattttgaacaagatacat 202  Q
    |||| |||||||||||||||| ||||||| | |||| |||| |||||||||||    
T  20900765 agttaggtcaacaaaaattgacgtatctggttcaaaatttggacaagatacat 20900713  T

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