View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_high_55 (Length: 241)
Name: NF19409_high_55
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_55 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23819671 - 23819894
Alignment:
| Q |
18 |
tctttttgtacacacacataaatacattatgtttatttatgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttct |
117 |
Q |
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| T |
23819671 |
tctttttgtacacacacataaatacattatgtttatttatgcattgtatctgaaaatttcctttttgacttgatcacagaattataatgcaaaactttct |
23819770 |
T |
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| Q |
118 |
aattttggcctggcaaaggacttgtccacggttgataaaagtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggta |
217 |
Q |
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| T |
23819771 |
aattttggcctggcaaaggacttgtccacggttgataaaagtcatgtcaccaccaagctaacctacggatatgcggctccagaatacttagccaccggta |
23819870 |
T |
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| Q |
218 |
atttaatctataacactatacaaa |
241 |
Q |
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| T |
23819871 |
atttaatcaataacactatacaaa |
23819894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 23832775 - 23832963
Alignment:
| Q |
29 |
acacacataaatacattatgtttatttatgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcct |
128 |
Q |
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| T |
23832775 |
acacacatgaatatattacgtttatttatgtattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttcaaattttggcct |
23832874 |
T |
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| Q |
129 |
ggcaaaggacttgtccacggttgataaaagtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggta |
217 |
Q |
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| T |
23832875 |
ggcaaagaacttgtccctggttgataaaagtcatgtacctaccaagctaacctctggatatacggctccggaatacctagccacaggta |
23832963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 23828940 - 23829111
Alignment:
| Q |
31 |
acacataaatacattatgtttatttatgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctgg |
130 |
Q |
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| T |
23828940 |
acacattaatatattatatttatttatgtatcatatctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcatt |
23829039 |
T |
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| Q |
131 |
caaaggacttgtccacggttgataaaagtcatgtcaccaccaagctaacctacggatatgcggctccagaat |
202 |
Q |
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| T |
23829040 |
caaagggcgggtccatggttgataaaagtcatgtctccaccaagctaacatacggatatgcagctccagaat |
23829111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 23825058 - 23825188
Alignment:
| Q |
87 |
ttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaaagtcatgtcaccaccaagctaacctacgga |
186 |
Q |
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| T |
23825058 |
ttgatgacagaattataatgcgaaactctttaattttgggctggcaaaggatgggtccacaggtgatcgaagccgtgtctacaccgggcaaatctacgga |
23825157 |
T |
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| Q |
187 |
tatgcggctccagaattcttagccaccggta |
217 |
Q |
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| T |
23825158 |
tatgcagctccagaatacctggccaccggta |
23825188 |
T |
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