View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_high_56 (Length: 241)
Name: NF19409_high_56
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_56 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18369624 - 18369856
Alignment:
| Q |
1 |
tagtttggagtccgcccaaaaagtaagtaaactttggccaatgattaatccagccagtattcgtacttgaattctccctgagcgattgtagttatatgta |
100 |
Q |
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| T |
18369624 |
tagtttggagtccgcccaaaaagtaagtaaactttggccaatgattaatccagccagtattcgtacttgaattctccctgagcgattgtagttatatgta |
18369723 |
T |
|
| Q |
101 |
tatgttaaactctaactcttaacaaatagttctaaccatcatggaaaaatttatcaaaaatccaattttcaaaacaccacatacagtatgtgataaaatt |
200 |
Q |
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| T |
18369724 |
tgtgttaaactctaactcttaacaaatagttctaaccatcatggaaaaatttatcaaaaatccaattttcaaaacaccaca-----tatgtgataaaatt |
18369818 |
T |
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| Q |
201 |
gaacaatatcctaaaacaatatattcaattagtatatt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
18369819 |
gaacaatatcctaaaacaatatattcaattagtatatt |
18369856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 18364314 - 18364542
Alignment:
| Q |
4 |
tttggagtccgcccaaaaagtaagtaaactttggccaatgattaatccagccagtattcgtacttgaattctccctgagcgatt-gtagttatatgtata |
102 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
18364314 |
tttggagtccgcccaaaaagtaagtaaactttggtcaatgattaatcaagccagtattcgtacttgaattctccctaagcgatttgtagttatatgtata |
18364413 |
T |
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| Q |
103 |
tgttaaactctaactcttaacaaatagttctaaccatcatggaaaaatttatcaaaaatccaattttcaaaacaccacatacagtatgtgataaaattga |
202 |
Q |
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| T |
18364414 |
tgttaaactctaactcttaacaaatagttctaacgatcatggaaaaatttatcaaaaatccaattttcaaaacgccaca-----tatgtgataaaattga |
18364508 |
T |
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| Q |
203 |
acaatatcctaaaacaatatattcaattagtata |
236 |
Q |
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| T |
18364509 |
acaatatcctaaaacaatatattcaattagtata |
18364542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 3020482 - 3020710
Alignment:
| Q |
4 |
tttggagtccgcccaaaaagtaagtaaactttggccaatgattaatccagccagtattcgtacttgaattctccctgagcgatt-gtagttatatgtata |
102 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
3020482 |
tttggagtccgcccaaaaagtaagtaaactttggtcaatgattaatcaagccagtattcgtacttgaattctccctaagcgatttgtagttatatgtata |
3020581 |
T |
|
| Q |
103 |
tgttaaactctaactcttaacaaatagttctaaccatcatggaaaaatttatcaaaaatccaattttcaaaacaccacatacagtatgtgataaaattga |
202 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
3020582 |
tgttaaactctaactcttaacaaatagttctaacgatcatggaaaaatttatcaaaaatccaattttcaaaacgccaca-----tatgtgataaaattga |
3020676 |
T |
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| Q |
203 |
acaatatcctaaaacaatatattcaattagtata |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
3020677 |
acaatatcctaaaacaatatattcaattagtata |
3020710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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