View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19409_high_60 (Length: 215)
Name: NF19409_high_60
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_60 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 4362284 - 4362457
Alignment:
| Q |
16 |
attacaacagatcatataataaaaatacgtagttatttcttgtatatatacattcctactaagtctacagtaattatattcaaaatcctatctccagaat |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4362284 |
attacaacggatcatataataaaaatacgtagttatttcttgtatatatacattcctactaagtctacagtaattatattcaaaatccta--accagaat |
4362381 |
T |
|
| Q |
116 |
gaacagaactcatgacaagtgtattgtgaaaacttgttatatgtgacttaacacttctagaagcaaataaataaat |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4362382 |
gaacagaactcatgacaagtgtattgtgaaaacttgttatatgtgacttaacacttctagaagcaaataaataaat |
4362457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University