View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_high_8 (Length: 466)
Name: NF19409_high_8
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 31201208 - 31201644
Alignment:
| Q |
18 |
cctcggatgctgattttttccgtggttaccaagatagggaaaactgattggagtaggactaattattcttgttatatataaacaggaagctaattggagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201208 |
cctcggatgctgattttttccgtggttaccaagatagggaaaactgattggagtaggactaattattcttgttatatataaacaggaagctaattggagc |
31201307 |
T |
|
| Q |
118 |
cagattcttcagcaatgcttacgaggcatacagtgacaagcttccctcatggcaacgtaccgcacgcgactttttaggccacggtactcatactctatca |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201308 |
cagattcttcagcaatgcttacgaggcatacaatgacaagcttccctcatggcaacgtaccgcacgcgactttttaggccacggtactcatactctatca |
31201407 |
T |
|
| Q |
218 |
acagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201408 |
acagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaag |
31201507 |
T |
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| Q |
318 |
tgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagccattagtgatggtgttgatataatctcactttc |
417 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201508 |
tgtgctggtctctgttagatcttgaagactgctttggtgccgatgtattagctgctattgatcaagccattagtgatggtgttgatataatctcactttc |
31201607 |
T |
|
| Q |
418 |
acttgctggccattctcttgtttatcccgaagatatt |
454 |
Q |
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| T |
31201608 |
acttgctggccattctcttgtttatcccgaagatatt |
31201644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 100 - 408
Target Start/End: Complemental strand, 31063878 - 31063570
Alignment:
| Q |
100 |
caggaagctaattggagccagattcttcagcaatgcttacgaggcatacagtgacaagcttccctcatggcaacgtaccgcacgcgactttttaggccac |
199 |
Q |
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|||||||||||||||||||||||| |||||| ||||||| ||| ||| | || ||| |||||| ||| ||| ||||| ||||| |||||| |||| ||| |
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| T |
31063878 |
caggaagctaattggagccagatttttcagcgatgcttatgagcgatataatggcaaacttcccacatcgcagcgtacagcacgtgactttgtaggtcac |
31063779 |
T |
|
| Q |
200 |
ggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtggttcgccaagagcta |
299 |
Q |
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| T |
31063778 |
ggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttaacattggaaatggtaccataaaaggaggttcaccaagagcta |
31063679 |
T |
|
| Q |
300 |
gggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagccattagtgatggtgt |
399 |
Q |
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| T |
31063678 |
gagttgcaacctacaaagtgtgctggtctctaacagatgccgctagttgctttggtgctgatgtattatctgctattgatcaagcaattgatgatggtgt |
31063579 |
T |
|
| Q |
400 |
tgatataat |
408 |
Q |
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||| ||||| |
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| T |
31063578 |
tgacataat |
31063570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 408
Target Start/End: Complemental strand, 31108871 - 31108657
Alignment:
| Q |
194 |
ggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtggttcgccaa |
293 |
Q |
| |
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||||| |||||||| || |||||||||||||| ||||| || ||||||| |||||| ||||| ||||| |||||||| ||||||| ||||| |||| |
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| T |
31108871 |
ggccatggtactcacacactatcaacagctggtggaaatttcgtaccaggtgcaagcatatttaacattggaaatggtaccataaaaggaggttcaccaa |
31108772 |
T |
|
| Q |
294 |
gagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagccattagtga |
393 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||| |||||||||||||||| ||| ||| |
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| T |
31108771 |
gagctagagttgcaacctacaaagtgtgctggtctctaacagatgccactagttgctttggtgctgatgtattatctgctattgatcaagcaattgatga |
31108672 |
T |
|
| Q |
394 |
tggtgttgatataat |
408 |
Q |
| |
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||||||||| ||||| |
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| T |
31108671 |
tggtgttgacataat |
31108657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 384
Target Start/End: Complemental strand, 31146630 - 31146431
Alignment:
| Q |
185 |
gactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtg |
284 |
Q |
| |
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|||||| ||||||| || || || || ||||||||||| || |||||||| |||| | | |||| |||||| ||||||||| ||||| ||||||||| |
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| T |
31146630 |
gactttgtaggccatgggacacacacactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtaccataaaaggtg |
31146531 |
T |
|
| Q |
285 |
gttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagc |
384 |
Q |
| |
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|||| |||||| | || |||||||||||||||| || |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31146530 |
gttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttgtagactgctttggtgccgatgtattagctgctattgatcaagc |
31146431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 384
Target Start/End: Complemental strand, 31164456 - 31164257
Alignment:
| Q |
185 |
gactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtg |
284 |
Q |
| |
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|||||| ||||||| || || || || ||||||||||| || |||||||| |||| | | |||| |||||| ||||||||| ||||| ||||||||| |
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| T |
31164456 |
gactttgtaggccatgggacacacacactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtaccataaaaggtg |
31164357 |
T |
|
| Q |
285 |
gttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagc |
384 |
Q |
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|||| |||||| | || |||||||||||||||| || |||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
31164356 |
gttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttgtagactgcttcggtgccgatgtattagctgctattgatcaagc |
31164257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 31051346 - 31051196
Alignment:
| Q |
179 |
gcacgcgactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaa |
278 |
Q |
| |
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||||| ||||||| ||||| |||||||| || |||||||||||||| |||||||| ||||||| |||||| |||||| ||| ||||||||||| | | |
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| T |
31051346 |
gcacgtgacttttacggccatggtactcacacactatcaacagctggtggaaacttcgtaccaggtgcaagcatatttggtatcggcaatggtaccatta |
31051247 |
T |
|
| Q |
279 |
aaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctc |
329 |
Q |
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|||||||||| |||| | | || |||| ||||||||||||||| ||||||| |
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| T |
31051246 |
aaggtggttcaccaaaatcaagagttgtaacctacaaagtgtgttggtctc |
31051196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 31051161 - 31051096
Alignment:
| Q |
352 |
tggtgccgatgtattagctgctattgatcaagccattagtgatggtgttgatataatctcactttc |
417 |
Q |
| |
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|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
31051161 |
tggtgctgatgtattatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttc |
31051096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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