View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_1 (Length: 1089)
Name: NF19409_low_1
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 966; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 966; E-Value: 0
Query Start/End: Original strand, 18 - 1007
Target Start/End: Complemental strand, 39167204 - 39166215
Alignment:
| Q |
18 |
gtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcggtaattgaattcacatgttttttctctgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167204 |
gtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcggtaattgaattcacatgttttttctctgc |
39167105 |
T |
|
| Q |
118 |
tttccttttgattttatcattccagctcgatgatcgtgctgttgattctgtgatgaaagaactttttaagaattacaaaacgtggtgcaaattcttggga |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167104 |
tttccttatgattttatcattccagctcgatgatcgtgctgttgattctgtgatgaaagaactttttaagaattacaaaacgtggtgcaaattcttggga |
39167005 |
T |
|
| Q |
218 |
cggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttatcttttgccttatgaatttaaagaataaaatctgaaatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39167004 |
cggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttatcttttgccttatgaattcaaagaataaaatctgaaatt |
39166905 |
T |
|
| Q |
318 |
gtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacatacagcagaggaagttgctttatatgggattgtatcttct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166904 |
gtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacatacagcagaggaagttgctttatatgggattgtatcttct |
39166805 |
T |
|
| Q |
418 |
catttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcacaatgtgagtacaaatataccacatgtttcactatatctt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166804 |
catttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcacaatgtgagtacaaatataccacatgtttcactatatctt |
39166705 |
T |
|
| Q |
518 |
gtgccacaatgtcttcgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgcacatttgctaataatggccaagtatgac |
617 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166704 |
gtgccacaatgtctttgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgcacatttgctaataatggccaagtatgac |
39166605 |
T |
|
| Q |
618 |
atcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcatt |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166604 |
atcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcatt |
39166505 |
T |
|
| Q |
718 |
cctacgaaaggttatcacacccctataccgagtaattgagaaggtgtgattttatctcacatggacattgttgtaatatctcaggtgcctatgttccctg |
817 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166504 |
cctacgaaaggttatcacacccatataccgagtaattgagaaggtgtgattttatttcacatggacattgttgtaatatctcaggtgcctatgttccctg |
39166405 |
T |
|
| Q |
818 |
taatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatg |
917 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39166404 |
taatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggcttcacactcagcatggtccaactatgatg |
39166305 |
T |
|
| Q |
918 |
atctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcgtcattcattacttgac |
1007 |
Q |
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| T |
39166304 |
atctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcgtcattcattacttgac |
39166215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1032 - 1078
Target Start/End: Complemental strand, 39166190 - 39166144
Alignment:
| Q |
1032 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1078 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166190 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
39166144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 874 - 1007
Target Start/End: Complemental strand, 5539224 - 5539091
Alignment:
| Q |
874 |
cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac |
973 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac |
5539125 |
T |
|
| Q |
974 |
ttggttcgtttcatttcgtcattcattacttgac |
1007 |
Q |
| |
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|||||| |||||||||| |||| ||||||||||| |
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| T |
5539124 |
ttggtttgtttcatttcatcatgcattacttgac |
5539091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1032 - 1078
Target Start/End: Complemental strand, 5539066 - 5539020
Alignment:
| Q |
1032 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1078 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5539066 |
caggtcacttgattgcttttctcttggatggcctataggtgatgatg |
5539020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 351 - 486
Target Start/End: Complemental strand, 43964353 - 43964218
Alignment:
| Q |
351 |
acagactgcctcaaggtcagccagacatacagcagaggaagttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcat |
450 |
Q |
| |
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||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| ||||| |
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| T |
43964353 |
acagacttcctcaaggtcagcaagagatacaacagagaaagttgctttatatgggcttgtatcttctcatatggggtgaagcgtccaatcttcgcttcat |
43964254 |
T |
|
| Q |
451 |
gccagagtgtctgtgctatatatttcacaatgtgag |
486 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||| |
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| T |
43964253 |
gccagagtgtatatgctacatatttcacaatgtgag |
43964218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 619 - 732
Target Start/End: Complemental strand, 43964103 - 43963990
Alignment:
| Q |
619 |
tcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattc |
718 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
43964103 |
tcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaaccttcttatggtggtgatgatgaggcattc |
43964004 |
T |
|
| Q |
719 |
ctacgaaaggttat |
732 |
Q |
| |
|
| || |||||||| |
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|
| T |
43964003 |
ttgcgcaaggttat |
43963990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 857 - 944
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
| Q |
857 |
caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
944 |
Q |
| |
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|||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| |||| |
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| T |
43963868 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
43963781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 43964521 - 43964464
Alignment:
| Q |
182 |
tttaagaattacaaaacgtggtgcaaattcttgggacggaagcatagtttgcggtgag |
239 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||| |
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|
| T |
43964521 |
tttaagaattacaaaacatggtgcaaatttttgggacgaaaacatagtttacggtgag |
43964464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1032 - 1078
Target Start/End: Complemental strand, 43963681 - 43963635
Alignment:
| Q |
1032 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1078 |
Q |
| |
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|||| ||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
43963681 |
caggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
43963635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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