View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_11 (Length: 453)
Name: NF19409_low_11
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 207 - 437
Target Start/End: Complemental strand, 41447937 - 41447703
Alignment:
| Q |
207 |
attgttgaaattgaagggagagaatcaaagtttattagaacatat----gacctatagttttcaccattgatccttgtcttgatgttcaatttcaacttc |
302 |
Q |
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| T |
41447937 |
attgttgaaattgaaaggagagaatcaaagtttattagaacatatatatgacctatagttttcctcattgatccttgtcttgatgttcaatttcaacttc |
41447838 |
T |
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| Q |
303 |
taagaatctggaaaacatgtcaactattttcatttcttgatggggtggatgaatgtgattttggaaaaggttaaaattgatctttttaattgttgtaagg |
402 |
Q |
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| T |
41447837 |
taaaaatctggaaaacatgtcaactattttcatttcttgacggggtggatgaatgtgattttggaaaaggttaaaattgatatttttaattgttgtaagg |
41447738 |
T |
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| Q |
403 |
atagaggtataataacccatttgggttggtccatt |
437 |
Q |
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| T |
41447737 |
atagaggtataataacccatttaggttggtccatt |
41447703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 41448233 - 41448042
Alignment:
| Q |
13 |
taggggtaaaattaaatccctggtatagatttccaatataaccattcaagataattgaatcttaaatcgcaaattatgcacaagtaagcaatcaatgtgg |
112 |
Q |
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| T |
41448233 |
taggggtaaaattaaatccctggtatagatttccaatagaaccattcaagataattgaatcttaaatcgcaaattatgcacaagtaagcaatcaatgtgg |
41448134 |
T |
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| Q |
113 |
ttaaatcaa--tctcaatg-ccagtataaaagtttgattgaaattggggaagggagaagaggacaagtgaagttggaagattggattcttgt |
201 |
Q |
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| T |
41448133 |
ttaaatcaatctctcaatgcccagtataaaagtttgattgaaattggggaagggagaagaggacaagtgaagttggaagattggattcttgt |
41448042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 31409538 - 31409494
Alignment:
| Q |
352 |
tgaatgtgattttggaaaaggttaaaattgatctttttaattgtt |
396 |
Q |
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| T |
31409538 |
tgaatgtgattttgaaaagggttaaaattgatatttttgattgtt |
31409494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 33568140 - 33568104
Alignment:
| Q |
356 |
tgtgattttggaaaaggttaaaattgatctttttaat |
392 |
Q |
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| T |
33568140 |
tgtgattttgaaaaaggttaaaattgatatttttaat |
33568104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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