View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_14 (Length: 430)
Name: NF19409_low_14
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 38439164 - 38438756
Alignment:
| Q |
13 |
agatacaataatcagactgagtctctaaagattacaataactagtgtgctttacatgtttgctaaagaacgtgtcacttaattagattcccaaagaataa |
112 |
Q |
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| T |
38439164 |
agatacaataatcagactgagtctctaaagattacaataactagtgtgctttacatgtttgctaaagaacgtgtcacttaattagattcccaaagaataa |
38439065 |
T |
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| Q |
113 |
atttacaatnnnnnnnncaaggtgcaaagtgacagatcctttaaaaatgtgaagcactattattcccatttagcaaggatcatcttcatatttttcccag |
212 |
Q |
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| T |
38439064 |
atttacaataaaaaaaacaaggtgcaaagtgacagatcctttaaaaatatgaagcactattattcccatttagtaaggatcatcttcatatttttcccag |
38438965 |
T |
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| Q |
213 |
ataaacattgctccaaacgttttagtcacccttattggcttataaacaaaacaaagagttgaatatttgcttaaaaaccacaggcataatatattgaaaa |
312 |
Q |
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| T |
38438964 |
ataaacattgctccaaacgttttagtcacccttactggcttataaacaaaacaaagggttcaatatttgataaaaaatcacaggcataatatatt-aaaa |
38438866 |
T |
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| Q |
313 |
acatcaaggattgctcctgtttcacatcaaattgattgacaaaaaatggttgcttttgagacttgatacggtggtcgatgcaatgggtggtggatggact |
412 |
Q |
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| T |
38438865 |
acatcaaggattgctcctgtttcacatcaaattgattgacaaaaaatggttgcttttgagacttgatacggtggtcgatgcaatgggtggtggatggact |
38438766 |
T |
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| Q |
413 |
tgtatctgtg |
422 |
Q |
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| T |
38438765 |
tgtatctgtg |
38438756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 15666859 - 15666921
Alignment:
| Q |
356 |
aaatggttgcttttgagacttgatacggtggtcgatgcaatgggtggtggatggacttgtatc |
418 |
Q |
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| T |
15666859 |
aaatggctgctttttagacttgatgttgtggttgatgcagtgggtggtggatggacttgtatc |
15666921 |
T |
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