View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19409_low_15 (Length: 424)
Name: NF19409_low_15
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 145 - 407
Target Start/End: Original strand, 42699361 - 42699623
Alignment:
| Q |
145 |
ttttaataaaggtagtagcgttactacagtacaaaaatgtattaataggtcttacacataattttcgttcacttcttgaaacaaagggttttccagttct |
244 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42699361 |
ttttaataaaggtactagcgttagtacagtacaaaaatgtattaataggtcttacacataattttcgttcacttctcgaaacaaagggttttccagttct |
42699460 |
T |
|
| Q |
245 |
gctgcaaaataagaaacagcagctgtaacaaagatgggtgatgactttaagatcgtgaaacgcaagctcactctctaccactctcagaacgacactgttt |
344 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42699461 |
gctgcaaaataagaaacagcagctgtgacaaagatgggtgatgactttaagatcgtgaaacgcaagctcactctctaccactctcagaacgatactgttt |
42699560 |
T |
|
| Q |
345 |
caactctaccagttcctgaaactaatgccgagaatatattgctattgccagaattgccgaaag |
407 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42699561 |
caactctaccggttcctgaaactaatgccgagaatatattgctattgccagaattgccgaaag |
42699623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 42699161 - 42699256
Alignment:
| Q |
59 |
tttatattcagataaattaacgtaaagttatcattatcagttggtgttgtttaaatagattctatcaaaattgatttt-aatagagattttaataa |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42699161 |
tttatattcagataaattaacgtaaagttatcattatcagttggtgatgtttaaatagattctatcaaaattgattttaaatagagattttaataa |
42699256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 42699006 - 42699058
Alignment:
| Q |
1 |
taaattcagatatagtataaatttgattacttaacatgaccttataagtgtat |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42699006 |
taaattcagatatagtataaatttgattacttaacatgaccttataagtgtat |
42699058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University