View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_17 (Length: 410)
Name: NF19409_low_17
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 1508228 - 1508620
Alignment:
| Q |
1 |
aaacatacaccacaattttcatcaccccacctatacttttttacacaagaacatagtagaaaacatgagtaacgttctcattttgcaaattttgggcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1508228 |
aaacatacaccacaattttcatcaccccacctat-cttttttacacaagaacatagtagaaaacatgagtaacgttctcattttgcaaattttgggcaca |
1508326 |
T |
|
| Q |
101 |
taaataacaattatcttgtgtgtactctttcatatgtaccaaaaaacatggctctttcttctttccnnnnnnnccctagtggagttgtactaatcaannn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1508327 |
taaataacaattatcttgtgtgtactctttcatatgtaccaaaaaacatggctctttcttctttcctttttttccctagtggagttgtactaatcaattt |
1508426 |
T |
|
| Q |
201 |
nnnnatttta-tttaccattcctaaagtttcatcatgtgagaattttttgtacgctttcctttatttttgtttgaacggtnnnnnnnncttccaattaat |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1508427 |
ttttattttattttaccattcctaaagtttcatcatgtgaaaattttttgtacgctttcctttatttttgtttgaacggtaaaaaaaacttccaattaat |
1508526 |
T |
|
| Q |
300 |
tcactcgcttttaagttttgaaccttttcctaacaaagctttatttgttc-ccaaatttacaagctatcataaattgaactttattatttccct |
392 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1508527 |
tcacttgcttttaagttttgaaccttttcctaacaaagctttatttgttcaccaaatttacaagctatcataaattgaactttattatttccct |
1508620 |
T |
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