View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_18 (Length: 402)
Name: NF19409_low_18
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 38309356 - 38309739
Alignment:
| Q |
1 |
aatcaatgggcgcttgcttataagcaaagtttgtaacttgtaaggaatcatcagaaatcacgtccatttagataccctctttcaaacacatcgttataac |
100 |
Q |
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| T |
38309356 |
aatcaatgggcgcttacttataagcaaagtttgtaacttgtaaggaatcatcagaaatcacgtccatttagataccctctttcaagcacatcgttataac |
38309455 |
T |
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| Q |
101 |
ttgcttcagttgtattagttttccccttgccatctgcagtcaatgaggataaaatcagttctacgcgatacacaatgcttgactggattagcannnnnnn |
200 |
Q |
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| T |
38309456 |
ttgcttcagttgtagtagttttccccttgccatctgcagtcaatgaggataaaatcagttctacgcgatacacaatgcttgactggattagcattttttt |
38309555 |
T |
|
| Q |
201 |
nctgccttctgtcactgaagttggccttcagtggtcttgcagtcaataaatcaagtataatttaacacaatagtgtggtataatactacaatatatcagc |
300 |
Q |
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| T |
38309556 |
tctggcttctgtcactgaagttggccttcagtggtcttgcagtcaatgaatcaagtataatttaacacaatagtgtggtataatactacaatatatcagc |
38309655 |
T |
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| Q |
301 |
agactagtaatcctagaattgagccattggttgatgactaaccattaattcattcacataaaatcataaaaaagacattgaaaa |
384 |
Q |
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| T |
38309656 |
agactagtaatcctagaattgagccattggttgatgactaaccattaattcattcagataaaatcataaaaaagacattgaaaa |
38309739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 38128943 - 38128807
Alignment:
| Q |
24 |
gcaaagtttgtaacttgtaaggaatcatcagaaatcacgtccatttagataccctctttcaaacacatcgttataacttgcttcagttgtattagttttc |
123 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||| |
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| T |
38128943 |
gcaaagtttgtatcttgtaaggaatcatcagaaatcatgtccaattagaaaccctctttcaagcacattgttataacttgcttcagttgtagcagttttc |
38128844 |
T |
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| Q |
124 |
cccttgccatctgcagtcaatgaggataaaatcagtt |
160 |
Q |
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| T |
38128843 |
cccttgccatctgcagtcaatgacgataaaatcagtt |
38128807 |
T |
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