View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_20 (Length: 390)
Name: NF19409_low_20
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 51531301 - 51530929
Alignment:
| Q |
1 |
aagctaatgcaaattttcaaatttcaccatatttgatgcctcatttcccttattactttttccaaaagtttctnnnnnnnnggaaaagagaaaataggta |
100 |
Q |
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| T |
51531301 |
aagctaatgcaacttttcaaatttcaccatatttgatgcctcatttcccttattactttttccaaaagtttctaaaaaaa-ggaaaagagaaaataggta |
51531203 |
T |
|
| Q |
101 |
tgatactgtaaatgcaatcttaccaaaggtagctgttcggaaagtagtccaaccgtccacacgattccgactaccggagataatagtagcatccatacct |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51531202 |
tgatactgtaaatgcaatcttaccaaaggtagctgatcggaaagtagtccaaccatccacacgattccgactaccggagataatagtagcatccatacct |
51531103 |
T |
|
| Q |
201 |
tcaccaatcatcataatattccatttcttcctatcaatctcaacattctcaacatatacaccttttttcacatatataacatatcttctcatgctgaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51531102 |
tcaccaatcatcataatattccatttcttcctatcaatctcaacattctcaacatatacaccttttttcacatatataacatatcttctcatgctgaatt |
51531003 |
T |
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| Q |
301 |
taggtgctgccaatacggcatccatcaccgtagtgtagttcccactcccatcagccgccacaatagcatcagca |
374 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51531002 |
taggtgctgccaatacggcatccatcactgtagtgtagttcccactcccatcagccgccacaatagcatcagca |
51530929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 118 - 373
Target Start/End: Complemental strand, 51524989 - 51524734
Alignment:
| Q |
118 |
tcttaccaaaggtagctgttcggaaagtagtccaaccgtccacacgattccgactaccggagataatagtagcatccataccttcaccaatcatcataat |
217 |
Q |
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|||||||||||||||||| |||||||| ||| ||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||| ||| || |
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| T |
51524989 |
tcttaccaaaggtagctgaccggaaagttgtcgaaccgtccacataattccgactgccggagatgatagtagcatccatgccttcaccaatcaacatgat |
51524890 |
T |
|
| Q |
218 |
attccatttcttcctatcaatctcaacattctcaacatatacaccttttttcacatatataacatatcttctcatgctgaatttaggtgctgccaatacg |
317 |
Q |
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||||||||||||| | | |||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||| || |||||||||| ||||| |
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| T |
51524889 |
attccatttcttcttcttaatctcaacattttcaacataaacaccttttttcacatatattacatatcttttcatgctgctttcaggtgctgccgatacg |
51524790 |
T |
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| Q |
318 |
gcatccatcaccgtagtgtagttcccactcccatcagccgccacaatagcatcagc |
373 |
Q |
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|||||||||||| ||| ||||| ||||| |||||||| ||||||| ||||||||| |
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| T |
51524789 |
gcatccatcaccttagcgtagtctccacttccatcagcagccacaacagcatcagc |
51524734 |
T |
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