View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19409_low_21 (Length: 378)

Name: NF19409_low_21
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19409_low_21
NF19409_low_21
[»] chr5 (17 HSPs)
chr5 (13-362)||(8644311-8644660)
chr5 (13-357)||(8677918-8678262)
chr5 (13-362)||(8636966-8637315)
chr5 (76-350)||(1600018-1600293)
chr5 (75-360)||(8535602-8535890)
chr5 (75-360)||(9074443-9074728)
chr5 (75-360)||(8529044-8529326)
chr5 (135-360)||(2856667-2856895)
chr5 (135-360)||(2874277-2874505)
chr5 (135-360)||(2844840-2845068)
chr5 (13-357)||(8641475-8641822)
chr5 (295-360)||(2904938-2905003)
chr5 (75-185)||(8547823-8547933)
chr5 (135-188)||(2904783-2904836)
chr5 (9-50)||(2856547-2856588)
chr5 (13-50)||(2874161-2874198)
chr5 (236-268)||(9003653-9003685)
[»] chr7 (3 HSPs)
chr7 (75-349)||(48361569-48361846)
chr7 (227-360)||(35779929-35780062)
chr7 (75-188)||(35780089-35780202)
[»] chr4 (1 HSPs)
chr4 (75-360)||(9443205-9443487)
[»] chr6 (2 HSPs)
chr6 (289-360)||(16716447-16716518)
chr6 (76-190)||(16716641-16716755)
[»] scaffold0627 (2 HSPs)
scaffold0627 (230-363)||(4745-4878)
scaffold0627 (76-190)||(4942-5054)
[»] chr1 (2 HSPs)
chr1 (287-349)||(26324202-26324264)
chr1 (138-267)||(5130964-5131093)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 8644660 - 8644311
Alignment:
Q  13 catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8644660 catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgagtcttcattatcccacttatgttaatggtgcgcttcattggatcag 8644561  T
Q  113 atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644560 atttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga 8644461  T
Q  213 tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644460 tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg 8644361  T
Q  313 aatatggcattggagaatcatggactaaggtttacaagattgatactttg 362  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  8644360 aatatgacattggagaatcatggactaaggtttacaacattgatactttg 8644311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 8678262 - 8677918
Alignment:
Q  13 catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||  || | ||||||||||| | ||||||||||||||||||||||| |    
T  8678262 catcatggagaaatgctgaagtggatcctcaaatttctattggatcagatttgaggctccgttatcccacttgtattaatggtgcgcttcattggatcgg 8678163  T
Q  113 atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga 212  Q
    |||||||| | |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  8678162 atttgagggtcaagaaatgtctatattgtgtttctgtttagaaactgagaagttgcaatcatttccttctcctccagtatttcaaaatcataataatgga 8678063  T
Q  213 tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg 312  Q
    |||||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  8678062 tttcgttgtaacaagcgtattcacatgggaaaattaagaggattactttacatttgcgatacatatcctttccgtgatgttgcaatgtgggatatgaatg 8677963  T
Q  313 aatatggcattggagaatcatggactaaggtttacaagattgata 357  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  8677962 aatatggcattggagaatcatggactaaggtttacaacattgata 8677918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 8637315 - 8636966
Alignment:
Q  13 catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag 112  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||  | |    |||| ||||||||||| ||| |||||| || |||||||||||||    
T  8637315 catcatggagaaatgctgaagtggatccccaaatttctattggatcaaatatatggcttcgttatcccacttgtgtgaatggtacgattcattggatcag 8637216  T
Q  113 atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctccagtgtttcaaaatcaaaataatgga 212  Q
    |||| ||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8637215 atttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcctccagtgttacaaaatcaaaataatgga 8637116  T
Q  213 tttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatg 312  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| || ||| ||||||||||||||||||||||||||||    
T  8637115 tttcgtcataacgagtgtattcgcattggagaattaaggggattactttatatttgtgatacatcttttttccgtgatgttgcaatgtgggttatgaatg 8637016  T
Q  313 aatatggcattggagaatcatggactaaggtttacaagattgatactttg 362  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  8637015 aatatggcattggagaatcatggactaaggtttacaacatcgatactttg 8636966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 350
Target Start/End: Original strand, 1600018 - 1600293
Alignment:
Q  76 atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt 175  Q
    ||||||||| ||| |||||||| ||||||||||| |||| ||||| |||  ||| ||| ||||||  ||||||||| ||||||||||||||||| |||||    
T  1600018 atcccacttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatt 1600117  T
Q  176 tccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga- 271  Q
    |||||||||||||   | ||||  |||||| |||||||||  | || |||||   | | || ||||||||||||||| |||||| ||||||||||| ||     
T  1600118 tccttctcctccacatgagtttggaaatcataataatggaacttgtggtaacagccatgttagcatgggagaattaaagggatttctttacatttgtgac 1600217  T
Q  272 tacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaag 350  Q
    |||   || || || ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  1600218 tac--ctttttatc-tgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttacaag 1600293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 75 - 360
Target Start/End: Complemental strand, 8535890 - 8535602
Alignment:
Q  75 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat 174  Q
    |||||||||| ||| |||||||| || |||||| | |||||||| | |    ||||||| ||||||  |||||| || |||||||||| | || | ||||    
T  8535890 tatcccacttgtgtgaatggtgcactacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcat 8535791  T
Q  175 ttccttctcctccag---tgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga 271  Q
    ||||||||||||||    |||||  |||||| ||||||||||||| | ||||    | |||| ||||||||||||||| |||||| ||||||||||| ||    
T  8535790 ttccttctcctccacagatgtttggaaatcataataatggatttcttagtaatagacatattagcatgggagaattaaagggatttctttacatttgtga 8535691  T
Q  272 tac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt 360  Q
    | | |  || || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  8535690 ttcgacctttttatc-tgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt 8535602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 75 - 360
Target Start/End: Original strand, 9074443 - 9074728
Alignment:
Q  75 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat 174  Q
    |||||||||| ||| |||||||| ||||||||||| |||| |||  || |  ||||||| ||||||| ||||||||| ||||||||||||||||| ||||    
T  9074443 tatcccacttgtgtgaatggtgcacttcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcat 9074542  T
Q  175 ttccttctcctcc---agtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga 271  Q
    |||||||||||||    ||||||  ||| || |||| |||| ||  |  ||||   | |||   |||||||||||||| |||||| ||||||||||| ||    
T  9074543 ttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacagacatat---catgggagaattaaagggatttctttacatttgtga 9074639  T
Q  272 -tacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt 360  Q
     |  | ||| || || ||||||| || |||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||    
T  9074640 ctggacatttttatc-tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatactt 9074728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 360
Target Start/End: Complemental strand, 8529326 - 8529044
Alignment:
Q  75 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat 174  Q
    |||||||||| ||| |||||||| ||||||||||| |||||||||| | |  ||||||| ||||||  |||||| || |||| |||||||||||| || |    
T  8529326 tatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgt 8529227  T
Q  175 ttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga 271  Q
    ||||||||||||||   ||||||  ||||||   |||||  ||| || |||    || |||| ||||||||||||||| |||||| || |||||||| ||    
T  8529226 ttccttctcctccacatgtgtttggaaatca---taatgttttttgttgtag---gcctattagcatgggagaattaaagggatttctatacatttgtga 8529133  T
Q  272 tac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt 360  Q
    | | |  ||  | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||    
T  8529132 tccgacctttatatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatactt 8529044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 360
Target Start/End: Original strand, 2856667 - 2856895
Alignment:
Q  135 atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgta 231  Q
    ||||||||||||  ||| ||||||||||||||||| || |||||||||||||||   ||||||  ||||||  ||||||||||||  | || |  || ||    
T  2856667 atattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgccta 2856766  T
Q  232 ttcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtga-tgttgcaatgtgggttatgaatgaatatggcattggagaat 330  Q
    || |  |||||||||| | |||||| |||||||||||  ||| ||  ||| | || || |||| ||||||||||||||||||||||||||||||||||||    
T  2856767 ttagattgggagaattgaagggatttctttacatttgtcatagatcgtctct-cgagaatgttacaatgtgggttatgaatgaatatggcattggagaat 2856865  T
Q  331 catggactaaggtttacaagattgatactt 360  Q
    |||||||||  |||||||| ||||||||||    
T  2856866 catggactattgtttacaacattgatactt 2856895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 360
Target Start/End: Original strand, 2874277 - 2874505
Alignment:
Q  135 atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgta 231  Q
    ||||||||||||  ||| ||||||||||||||||| || |||||||||||||||   ||||||  ||||||  ||||||||||||  | || |  || ||    
T  2874277 atattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgccta 2874376  T
Q  232 ttcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtga-tgttgcaatgtgggttatgaatgaatatggcattggagaat 330  Q
    || |  |||||||||| | |||||| |||||||||||  ||| ||  ||| | || || |||| ||||||||||||||||||||||||||||||||||||    
T  2874377 ttagattgggagaattgaagggatttctttacatttgtcatagatcgtctct-cgagaatgttacaatgtgggttatgaatgaatatggcattggagaat 2874475  T
Q  331 catggactaaggtttacaagattgatactt 360  Q
    |||||||||  |||||||| ||||||||||    
T  2874476 catggactattgtttacaacattgatactt 2874505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 360
Target Start/End: Original strand, 2844840 - 2845068
Alignment:
Q  135 atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgta 231  Q
    ||||||||||||  ||| ||||||||||||||||| || |||||||||||||||   ||||||  ||||||  ||||||||||||  | || |  || ||    
T  2844840 atattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccttagcatgccta 2844939  T
Q  232 ttcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatc 331  Q
    || |  |||||||||| | |||||| |||||||||||  ||| ||  ||| ||    ||||| |||||||||||||||||||||||||||||||||||||    
T  2844940 ttagattgggagaattgaagggatttctttacatttgtcatatatcgtctcttgagaatgttacaatgtgggttatgaatgaatatggcattggagaatc 2845039  T
Q  332 atggactaaggtttacaagattgatactt 360  Q
    ||||||||  |||||||  ||||||||||    
T  2845040 atggactattgtttacagcattgatactt 2845068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 8641822 - 8641475
Alignment:
Q  13 catcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgaatcttcattatcccacttatgttaatggtgcgcttcattggatcag 112  Q
    ||||||||||||||| |||||| |||||||| |||||||||         | || |||| | |||||||||| ||| ||| |||  |||||||| ||||     
T  8641822 catcatggagaaatgttgaagtggatcctcagatttctatt---------tcgagtcttaagtatcccacttgtgtgaatagtgttcttcattgaatcaa 8641732  T
Q  113 atttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataat 209  Q
    ||||||||  ||  ||||||| ||||| ||||||||||| ||||||||||| ||| | | ||||||||||||||||   ||||||  |||||| ||||||    
T  8641731 atttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgtttggaaatcataataat 8641632  T
Q  210 ---ggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattc-----ttttcgt-gatgttgcaatgt 300  Q
       ||| ||| | |||||  || |||| |||||||||| |||| |||||| | ||||||||| |||    | ||     ||||| | |||||  || |||    
T  8641631 aatggaattcatggtaacaggcttattagcatgggagagttaaagggatttccttacatttgtgatcgtgactcgacctttttctttgatgtcacagtgt 8641532  T
Q  301 gggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgata 357  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  8641531 gggttatgaatgaatatggcattggagaatcatggactaaggcttacaacattgata 8641475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 2904938 - 2905003
Alignment:
Q  295 caatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  2904938 caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt 2905003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 8547823 - 8547933
Alignment:
Q  75 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat 174  Q
    |||||||||| ||| ||| |||| |||||||||||| ||||| ||||    | | |||||||||||||||| ||||| ||||| |||||||| |||||||    
T  8547823 tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat 8547922  T
Q  175 ttccttctcct 185  Q
    |||||||||||    
T  8547923 ttccttctcct 8547933  T

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Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 2904783 - 2904836
Alignment:
Q  135 atattgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca 188  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||||||||    
T  2904783 atattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctcca 2904836  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2856547 - 2856588
Alignment:
Q  9 acatcatcatggagaaatgctgaagtagatcctcaaatttct 50  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  2856547 acatcatcatggagaaatgttgaagtggatcctcaaatttct 2856588  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 2874161 - 2874198
Alignment:
Q  13 catcatggagaaatgctgaagtagatcctcaaatttct 50  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  2874161 catcatggagaaatgttgaagtggatcctcaaatttct 2874198  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 9003685 - 9003653
Alignment:
Q  236 catgggagaattaaggggattactttacatttg 268  Q
    ||||||||||||||||||||| |||||||||||    
T  9003685 catgggagaattaaggggatttctttacatttg 9003653  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 75 - 349
Target Start/End: Original strand, 48361569 - 48361846
Alignment:
Q  75 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat 174  Q
    |||||||||| ||| |||||||| ||||||||||| |||||||||| | |  ||||||| ||||||| ||||||||| |||||||||||| |||| ||||    
T  48361569 tatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcat 48361668  T
Q  175 ttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga 271  Q
    ||||||||||||||   ||||||  |||||| ||||||||| ||| | |||||  || |||| ||||||||||||||| |||||| ||||||||||| ||    
T  48361669 ttccttctcctccacatgtgtttggaaatcataataatggaattcttggtaacaggcatattagcatgggagaattaaagggatttctttacatttgtga 48361768  T
Q  272 -tacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaa 349  Q
     |  |  ||    || ||||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  48361769 ctcgacctttgcatc-tgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttacaa 48361846  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 360
Target Start/End: Complemental strand, 35780062 - 35779929
Alignment:
Q  227 gcgtattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattgga 326  Q
    ||||||| ||||||||||||||| |||||| ||||||||||| ||     ||| ||||  ||||||| |||||||||||||||||||  ||||||||| |    
T  35780062 gcgtattagcatgggagaattaaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaa 35779963  T
Q  327 gaatcatggactaaggtttacaagattgatactt 360  Q
    ||||| ||||||||||||||||| ||||| ||||    
T  35779962 gaatcgtggactaaggtttacaacattgagactt 35779929  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 35780202 - 35780089
Alignment:
Q  75 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat 174  Q
    |||||||||| ||| ||||||| |||||| ||||||| ||||||||   || ||| ||| ||||| ||||| ||||| ||| |||||||||||||  |||    
T  35780202 tatcccacttgtgtgaatggtgtgcttcactggatcaaatttgaggggcaacaaaagtcaatattatgtttttgttttgaaggtgagaggttgcagccat 35780103  T
Q  175 ttccttctcctcca 188  Q
    ||||||||||||||    
T  35780102 ttccttctcctcca 35780089  T

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Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 75 - 360
Target Start/End: Complemental strand, 9443487 - 9443205
Alignment:
Q  75 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcat 174  Q
    |||||||||| ||| |||||||| ||||||||||| ||||||||||||||  ||||||| ||||||  |||||| || ||||||||||||||||| ||||    
T  9443487 tatcccacttgtgtgaatggtgcacttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcat 9443388  T
Q  175 ttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattcgcatgggagaattaaggggattactttacatttgcga 271  Q
    ||||||||||||||   ||||||  |||||   ||||||  | | || |||    || |||| ||||||||||||||| |||||| || |||||||| ||    
T  9443387 ttccttctcctccacatgtgtttggaaatc---ataatgtttattgtagta---ggcctattagcatgggagaattaaagggatttctatacatttgtga 9443294  T
Q  272 tac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt 360  Q
    | | |  ||  | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||    
T  9443293 tccgacctttatatc-taatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatactt 9443205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 16716518 - 16716447
Alignment:
Q  289 atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt 360  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  16716518 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacattgatactt 16716447  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 16716755 - 16716641
Alignment:
Q  76 atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt 175  Q
    ||||||||| ||| |||||||| ||||||||| ||| ||||||||     |||| ||||||||||||||| ||||| |||||||||| |||||| |||||    
T  16716755 atcccacttgtgtgaatggtgcacttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatt 16716656  T
Q  176 tccttctcctccagt 190  Q
    ||||||||| |||||    
T  16716655 tccttctcccccagt 16716641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 4878 - 4745
Alignment:
Q  230 tattcgcatgggagaattaaggggattactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaa 329  Q
    |||| ||||||||||||||| |||||| ||||||||||| ||  || | || ||     ||||| ||||||||||||||||||||||||||||||| |||    
T  4878 tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaa 4779  T
Q  330 tcatggactaaggtttacaagattgatactttgt 363  Q
    |||||||||||||||||| | ||| |||||||||    
T  4778 tcatggactaaggtttaccacattaatactttgt 4745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 5054 - 4942
Alignment:
Q  76 atcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgtttagaaagtgagaggttgcaatcatt 175  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||   | |||| |||  |||||||||| ||||| || ||||||||||||||||||||    
T  5054 atcccacttgtgtgaatggtgcacttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatt 4957  T
Q  176 tccttctcctccagt 190  Q
    ||| ||||| |||||    
T  4956 tccctctcccccagt 4942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 26324202 - 26324264
Alignment:
Q  287 tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaa 349  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  26324202 tgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaa 26324264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 5131093 - 5130964
Alignment:
Q  138 ttgtgtttctgtttagaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaacgagcgtattc 234  Q
    ||||||||| |||| ||||||||||| ||||||||||| ||||||||||||   |||||| ||||||   ||||||  |||  | | | ||||| |||      
T  5131093 ttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatc---ataatgatttttatggcaccgagcatatcg 5130997  T
Q  235 gcatgggagaattaaggggattactttacattt 267  Q
    ||||||||||||||| |||||| ||||||||||    
T  5130996 gcatgggagaattaaagggatttctttacattt 5130964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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