View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_23 (Length: 374)
Name: NF19409_low_23
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 2143801 - 2144150
Alignment:
| Q |
10 |
ataatacttacatatcatttattaaagaagtcatcaccaaacaacggaagttgaatctacaaacttacaaatgagtcaactactcaccaacgttgttaat |
109 |
Q |
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| T |
2143801 |
ataatacttacatatcatctattaaagaaatcatcaccaaacaacgaaagttgaatctacaaacttaaaaatgagtcaactactcaccaactttgttaat |
2143900 |
T |
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| Q |
110 |
tatcagctacaggtacttttaaatttatacattctggcacgctgatgctaacaagtcctcgttatatataaggtcccccactctcttctcatcccaacaa |
209 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2143901 |
tattagctacaggtacttttaaatttatacattctggcacgctgatgctaacaagtcctcgttatttataaggtcccccactctcttctcatcccaacaa |
2144000 |
T |
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| Q |
210 |
taatattaaccctgctgctcatataagagaaaatataaatagtagcagtaacaagttgtgtatagaaatattcnnnnnnngtttcgaccaaagaggctgg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2144001 |
taatattaaccctgctgctcatataagagaaaatataaatagtagcagtaacaagttgtgtatagaaatattctttttttgtttcgaccaaagaggctgg |
2144100 |
T |
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| Q |
310 |
cactgcatgcgcaagagtgtgatctcttattaaggagaataaaacatatg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2144101 |
gactgcatgcgcaagagtgtgatctcttattaaggagaataaaacatatg |
2144150 |
T |
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