View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19409_low_24 (Length: 366)
Name: NF19409_low_24
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 29981979 - 29981649
Alignment:
| Q |
17 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981979 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
29981880 |
T |
|
| Q |
117 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981879 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
29981780 |
T |
|
| Q |
217 |
atgttcgtagtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981779 |
atgttcgtagtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtt |
29981680 |
T |
|
| Q |
317 |
tcacaaacaccaacgagttgatggaactatg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
29981679 |
tcacaaacaccaacgagttgatggaactatg |
29981649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 8156063 - 8156284
Alignment:
| Q |
29 |
aacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaataat |
128 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8156063 |
aacacgaaagcgagcaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataagaatggttcataaggcaagaaataat |
8156162 |
T |
|
| Q |
129 |
ggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgtagta |
228 |
Q |
| |
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||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
8156163 |
ggcatgcccttt-ggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgtccta |
8156261 |
T |
|
| Q |
229 |
tgacagcaatttcatctctcaat |
251 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
8156262 |
tgacagcaatttcatctctcaat |
8156284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 51404730 - 51404994
Alignment:
| Q |
25 |
gaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaa |
124 |
Q |
| |
|
||||||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||||||| ||||||| || | |||||||| || ||| | || |
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|
| T |
51404730 |
gaggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcacaaagcacgtaa |
51404829 |
T |
|
| Q |
125 |
taatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgt |
224 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||| |||| |||||||| || || || ||| | |||||| | || | ||||||||||||||| |
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|
| T |
51404830 |
caatggaatgcccttttggaacaaaaaacaaaatga---tgaagatcaaatggttatcgctttccaaacctatggaaaattgaacagtgtcaatgttcgt |
51404926 |
T |
|
| Q |
225 |
agtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcg |
292 |
Q |
| |
|
|||||||| ||||| |||||| ||||| |||||||| |||||| | ||||| || |||||||| |
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|
| T |
51404927 |
cccatgacagccatttctgctctcagcaacatccatgaagatatttgtactagtgctcatcaaaagcg |
51404994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 7674772 - 7675006
Alignment:
| Q |
17 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
7674772 |
atcatcaagaggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctgagaaagaccttcagccataacaatggttcataag |
7674871 |
T |
|
| Q |
117 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
216 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7674872 |
gcaagaaataatggcatgcccttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtca |
7674971 |
T |
|
| Q |
217 |
atgttcgtagtatgacagcaatttcatctctcaat |
251 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |
|
|
| T |
7674972 |
atgttcgtcctatgacaacaatttcatctctcaat |
7675006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 36613673 - 36613439
Alignment:
| Q |
17 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36613673 |
atcatcaagaggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
36613574 |
T |
|
| Q |
117 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
216 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
36613573 |
gcaagaaataatggcatgcccttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtca |
36613474 |
T |
|
| Q |
217 |
atgttcgtagtatgacagcaatttcatctctcaat |
251 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||| |
|
|
| T |
36613473 |
atgttcgtcctgtgacaacaatttcatctctcaat |
36613439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 25523896 - 25523662
Alignment:
| Q |
17 |
atcatcaagaggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataag |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25523896 |
atcatcaagaggaacacgaaagcaaggaaagttgtgtatatatgcaatgcacttaatagaactctcagaaagaccttcagccataacaatggttcataag |
25523797 |
T |
|
| Q |
117 |
gcaagaaataatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtca |
216 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25523796 |
gcaagaaatattggcatgcccttttggaacaaaaaacaacatgacaaaaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtca |
25523697 |
T |
|
| Q |
217 |
atgttcgtagtatgacagcaatttcatctctcaat |
251 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |
|
|
| T |
25523696 |
ttgttcgtcctatgacaacaatttcatctctcaat |
25523662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 47370102 - 47370132
Alignment:
| Q |
17 |
atcatcaagaggaacacgaaagcgaggaaag |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47370102 |
atcatcaagaggaacacgaaagcgaggaaag |
47370132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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