View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19409_low_25 (Length: 366)
Name: NF19409_low_25
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 38936203 - 38935865
Alignment:
| Q |
13 |
aatattgtctcaagaacattctggaggggccaacaaaaaggtacttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936203 |
aatattgtctcaagaacattctggaggggccaacaaaaaggtacttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgtt |
38936104 |
T |
|
| Q |
113 |
ggaattctactatttcaaaggaaagctaaaaaacttagtgaagaatcccaaagcattgaagataatgatcaatctatttgcatgctatggggaagagatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38936103 |
ggaattctactatttcaaaggaaagctaaaaaacttagtgaagaatcccaaagcattgaagataatgatcaatctatttgcatggtatggggaagagatg |
38936004 |
T |
|
| Q |
213 |
ggaaattcacattttctgatcttgttaaagcaaccaatgatttcaatgaaaaatattgcattgggaaaggaggatttggaagtgtttatagagcggaatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936003 |
ggaaattcacattttctgatcttgttaaagcaaccaatgatttcaacgaaaaatattgcattgggaaaggaggatttggaagtgtttatagagcggaatt |
38935904 |
T |
|
| Q |
313 |
ctctacaggtcaagttgttgctgtaaaaagactcaatat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935903 |
ctctacaggtcaagttgttgctgtaaaaagactcaatat |
38935865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 39306767 - 39306932
Alignment:
| Q |
31 |
ttctggaggggccaacaaaaaggtacttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgttggaattctactatttcaa |
130 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||| |||||| || |||||| | |
|
|
| T |
39306767 |
ttctggaggagccaacagaaaggtacttcttggtgttactatatcagttggtggagtactatttatagggatgatttgtgctggaatcttaatatttcga |
39306866 |
T |
|
| Q |
131 |
aggaaagctaaaaaacttagtgaagaatcccaaagcattgaagataatgatcaatctatttgcatg |
196 |
Q |
| |
|
||| |||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39306867 |
aggcaagccaaaaaacacggtgaagaatccaaaaacattgaagataatgatcaatctatttgcatg |
39306932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University