View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_26 (Length: 365)
Name: NF19409_low_26
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 15052010 - 15052345
Alignment:
| Q |
1 |
ttgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15052010 |
ttgaatgaatactggtatcgtgctataaataatagctggttattaacacaattttcaagataacgaaaattgcaactagtgttgtgttctccttcaatgg |
15052109 |
T |
|
| Q |
101 |
cttcaacagatctcaaacatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatcattataataacctaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15052110 |
cttcaacagatctcaaacatatgaaagaagaccaatcaagggatggacaagaaaaaattagcgaagaaaacaaggtaatccatgattataataacctaat |
15052209 |
T |
|
| Q |
201 |
cttgtctcttcctagagaagatgatgggtctgtaagtcaatatttgtatttttatcatgaattttggtgtccatctacacttatccaatctacgatctct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15052210 |
cttgtctcttcctagagaagatgatgggtctgtaagtcaatatttgtatttttatcatgaattttggtgtccatctacatttatccaatctacgatctct |
15052309 |
T |
|
| Q |
301 |
tttcaaaataattttcatgctaaagacagtgatatt |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15052310 |
tttcaaaataattttcatgctaaagacagtgatatt |
15052345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 15066215 - 15066547
Alignment:
| Q |
1 |
ttgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatgg |
100 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15066215 |
ttgaatgagtactggcatcgtgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatgg |
15066314 |
T |
|
| Q |
101 |
cttcaacagatctcaaacatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatcattataataacctaat |
200 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15066315 |
cttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataataacctaat |
15066414 |
T |
|
| Q |
201 |
cttgtctcttcctagagaagatgatgggtctgtaagtcaatatttgtatttttatcatgaattttggtgtccatctacacttatccaatctacgatctct |
300 |
Q |
| |
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||||||||||||||||||| |||| | || | ||||||||| ||||||||||||| ||||||||||||||| || |||||||||||| || |||| |
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| T |
15066415 |
cttgtctcttcctagagaa---aatggatgtgatactcaatatttttatttttatcatggattttggtgtccatcaactcttatccaatctgtgaactct |
15066511 |
T |
|
| Q |
301 |
tttcaaaataattttcatgctaaagacagtgatatt |
336 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| |
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| T |
15066512 |
tttcaaaataattttcatgccaaagatagtgatatt |
15066547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 15076168 - 15076386
Alignment:
| Q |
1 |
ttgaatgaatactggtatcgtgctataaataatagctggttatgaacataattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatgg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15076168 |
ttgaatgaatactggtatcatgctataaataatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatgg |
15076267 |
T |
|
| Q |
101 |
cttcaacagatctcaaacatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatcattataataacctaat |
200 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15076268 |
cttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataataacctaat |
15076367 |
T |
|
| Q |
201 |
cttgtctcttcctagagaa |
219 |
Q |
| |
|
|||||| ||||||| |||| |
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| T |
15076368 |
cttgtcacttcctaaagaa |
15076386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 82 - 336
Target Start/End: Complemental strand, 15215147 - 15214896
Alignment:
| Q |
82 |
ttgtgttctccttcaatggcttcaacagatctcaaacatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatcc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |
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| T |
15215147 |
ttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagcc |
15215048 |
T |
|
| Q |
182 |
atcattataataacctaatcttgtctcttcctagagaagatgatgggtctgtaagtcaatatttgtatttttatcatgaattttggtgtccatctacact |
281 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||||| |||||| || | ||||||| ||||||||| ||||| ||||||||||||||| || || |
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| T |
15215047 |
atgattataataacctaatcttgtcacttcctagagaa---aatgggtgtgagactcaatatatgtatttttttcatggattttggtgtccatcaactct |
15214951 |
T |
|
| Q |
282 |
tatccaatctacgatctcttttcaaaataattttcatgctaaagacagtgatatt |
336 |
Q |
| |
|
||| |||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
15214950 |
tattcaatctgtgaactcttttcaaaataattttcatgctaaagacagtgatatt |
15214896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 336
Target Start/End: Original strand, 13033048 - 13033216
Alignment:
| Q |
165 |
agaaaacaaggtaatccatcattataataacctaatcttgtctcttcctagagaagatgatgggtctgtaagtcaatatttgtatttttatcatgaattt |
264 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| || | | ||||| ||||||||| ||||| |||| |
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| T |
13033048 |
agaaaacaaggtaatccatgattataataacctaatcttgtcacttcctagagaa---aatgggtgtgagactgaatatatgtatttttttcatggattt |
13033144 |
T |
|
| Q |
265 |
tggtgtccatctacacttatccaatctacgatctcttttcaaaataattttcatgctaaagacagtgatatt |
336 |
Q |
| |
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||||||||||| |||||||||||| | | ||||||||||||| |||||||| ||||||| ||||||| |
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| T |
13033145 |
tggtgtccatcatatcttatccaatctgtcaacacttttcaaaataaatttcatgccaaagacaatgatatt |
13033216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 333
Target Start/End: Original strand, 15047452 - 15047562
Alignment:
| Q |
224 |
atgggtctgtaagtcaatatttgtatttttat-catgaattttggtgtccatctacacttatccaatctacgatctcttttcaaaataattttcatgcta |
322 |
Q |
| |
|
|||||||| ||| |||||||||||||||| | |||| |||| ||||||||| || ||||||||||| | | ||||||||||||| ||||| | || | |
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| T |
15047452 |
atgggtctctaacccaatatttgtattttttttcatggatttctgtgtccatcaactcttatccaatccataaactcttttcaaaattattttaaggcca |
15047551 |
T |
|
| Q |
323 |
aagacagtgat |
333 |
Q |
| |
|
|||| |||||| |
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|
| T |
15047552 |
aagagagtgat |
15047562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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