View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_31 (Length: 338)
Name: NF19409_low_31
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 29177106 - 29176783
Alignment:
| Q |
1 |
cacagacaaagcaggtgttagaatcaaatcaaatcaaatgccgttaacaaatgacagtaataacaagggtctgctaactagtgttgggagtacttattaa |
100 |
Q |
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| T |
29177106 |
cacaaacaaagcaggtgttagaatcaaatcaaatcaaatgccgttaacaaatgacagtaataacaagggtttgctaactagtgttgggagtacttattaa |
29177007 |
T |
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| Q |
101 |
gaatattcaaaaatcattatagataacttattgatttgaaaaaactaagctacacaaggtatcacaattgatctatgcagcagtaacacataaacggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29177006 |
gaatattcaaaaatcattatagataacttattgatttgaaaaaactaagctacacaaggtatcacaattgatctatgcagcagtaacacataaacggatg |
29176907 |
T |
|
| Q |
201 |
cacacttacatagacacttgtattaatttaagaaaataatgaaactaattaaatatacaataatgctgtgctattactcaaagtgatattgacaccatct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29176906 |
cacacttacatagacacttgtattaatttaagaaaataatgaaactaattaaatatacaataatgttgtgctattactcaaagtgatattgacaccatct |
29176807 |
T |
|
| Q |
301 |
atcacgataagtgtgatcatttgt |
324 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
29176806 |
atcacgataagtgttatcatttgt |
29176783 |
T |
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