View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_32 (Length: 337)
Name: NF19409_low_32
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 17371417 - 17371643
Alignment:
| Q |
21 |
tgttgttgtttatgttgaccgatctgaaaaacttgtggttatgtgtttgaaaattggttgtttaagaatgaaaattatagagagggattaaggaaatttt |
120 |
Q |
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| T |
17371417 |
tgttgttgtttatgttgacagatctgaaaaacttgtgggtatgtgtttgaaaataggttgtttaagaatgaaaattatagagagggattaaggaaatttt |
17371516 |
T |
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| Q |
121 |
ttaagtatgatgaacttttattggtgaaggatgaacaatttggggataaagaagaagattaatgaagaggaatttatgggcagaagatgaatgcagaagc |
220 |
Q |
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| T |
17371517 |
ttaagtatgatgaacttttatgggtgaaggatgaacaatttggggataaagaagaagattaatgaagaggaatttatgggcagaagatgaatgcagaagc |
17371616 |
T |
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| Q |
221 |
tacacaatatcaatgtttcaattaaat |
247 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
17371617 |
tacacaatatcaatgttttaattaaat |
17371643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 17371696 - 17371746
Alignment:
| Q |
279 |
attaaaatatgttaaatgccacgtgtatatgattgtacattcatcaattgc |
329 |
Q |
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| T |
17371696 |
attaaaatatgttaaatgccacgtgtatatgattgtacagtcagcaattgc |
17371746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 24749169 - 24749399
Alignment:
| Q |
23 |
ttgttgtttatgttgaccgatctgaaaaacttgtggttatgtgtttgaaaattggttgtttaagaatgaaaattatagagagggattaaggaaatttttt |
122 |
Q |
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| T |
24749169 |
ttgttgtttatgttgacagatctgaaaaacttgtgggtatgtgtttgaaaataggttgtttaagaatgaaaattaaagagagggattaaggaaatttttt |
24749268 |
T |
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| Q |
123 |
aagtatgatgaacttttattggtgaaggatgaacaatttggggataaagaagaagattaatgaagaggaatttatgggcagaagatgaatgcagaagct- |
221 |
Q |
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| T |
24749269 |
aagtatgatgaacttttatgggtgaaggatgaacaatttggggataaagaagaagattaatgaagaggaatttatgggcaatagatgaatgcagaagcta |
24749368 |
T |
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| Q |
222 |
----acacaatatcaatgtttcaattaaatc |
248 |
Q |
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| T |
24749369 |
cacaacacaatatcaatgttttaattaaatc |
24749399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 24749452 - 24749501
Alignment:
| Q |
279 |
attaaaatatgttaaatgccacgtgtatatgattgtacattcatcaattg |
328 |
Q |
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| T |
24749452 |
attaaaatatgttaaatgccacgtgtatatgattgtacactcagcaattg |
24749501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 39619108 - 39618997
Alignment:
| Q |
78 |
ttgtttaagaatgaaaattatagagagggattaaggaaattttttaagtatgatgaacttttattggtgaaggatgaacaatttggggataaagaagaag |
177 |
Q |
| |
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||||||| |||||||||| |||||| | ||||||||||| | |||||||||||| ||||| ||||||| ||| || |||||||||||||| |||| |
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| T |
39619108 |
ttgtttaggaatgaaaataatagag--gaattaaggaaatat---aagtatgatgaatttttaaaggtgaagaatgtgcattttggggataaagatgaag |
39619014 |
T |
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| Q |
178 |
attaatgaagaggaatt |
194 |
Q |
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| T |
39619013 |
attaatgaagaggaatt |
39618997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 24610775 - 24610847
Alignment:
| Q |
122 |
taagtatgatgaacttttattggtgaaggatgaacaatttggggataaagaagaagattaatgaagaggaatt |
194 |
Q |
| |
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||||||||||||| |||||| | ||||| ||| || |||||||||||||| ||||||||||||||||||||| |
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| T |
24610775 |
taagtatgatgaatttttatggatgaagaatgtgcattttggggataaagatgaagattaatgaagaggaatt |
24610847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 17516934 - 17517006
Alignment:
| Q |
122 |
taagtatgatgaacttttattggtgaaggatgaacaatttggggataaagaagaagattaatgaagaggaatt |
194 |
Q |
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| T |
17516934 |
taagtatgatgaatttttatatgtgaagaatgtgcatttttgggataaagatgaagattaatgaagaggaatt |
17517006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 52402450 - 52402338
Alignment:
| Q |
78 |
ttgtttaagaatgaaaattatagagagggattaaggaaattttttaagtatgatgaacttttattggtgaaggatgaacaatttggggataaagaagaag |
177 |
Q |
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||||||| |||||||||| |||||| | |||||||||| | | |||||||||||| |||||| |||||| ||| || || |||||||||| |||| |
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| T |
52402450 |
ttgtttaggaatgaaaataatagag--gaattaaggaaaatat--aagtatgatgaatttttatatgtgaagaatgtgcatttctgggataaagatgaag |
52402355 |
T |
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| Q |
178 |
attaatgaagaggaatt |
194 |
Q |
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||||||||||||||||| |
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| T |
52402354 |
attaatgaagaggaatt |
52402338 |
T |
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