View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_34 (Length: 326)
Name: NF19409_low_34
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 3373664 - 3373962
Alignment:
| Q |
17 |
aacaaaggtgtgcatatctgatatgatccggtgtgtagtaaaacaccacctttgtggtaattagtactcggtgtcggtgacaagtttactgaattctcag |
116 |
Q |
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| T |
3373664 |
aacaaaggtgtgcatatctgatatgatccggtgtgtagtaaaacaccacctttgtggtaattagtactcggtgtcggtgacaagtttactgaattctcag |
3373763 |
T |
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| Q |
117 |
tactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373764 |
tactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaa |
3373863 |
T |
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| Q |
217 |
cttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagattattctttct |
315 |
Q |
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| T |
3373864 |
cttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagattattctttct |
3373962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 311
Target Start/End: Original strand, 3401889 - 3402091
Alignment:
| Q |
108 |
aattctcagtactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaa |
207 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||| |||||||| |||| |||| ||| ||| |
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| T |
3401889 |
aattctcattactctttccaatggattgatatgtatcaggtagtggtaagcagttctctgggaaatgaacagtctgagcagatgctaaaaacacaggaaa |
3401988 |
T |
|
| Q |
208 |
atgaggtaacttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagatta |
307 |
Q |
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| T |
3401989 |
atgaggtgactccaacatcaacgccaacggcagctccacccgtgtctactgctggtacaatacctaa-ctctcatcttcatcttccttccacggagatga |
3402087 |
T |
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| Q |
308 |
ttct |
311 |
Q |
| |
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|||| |
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| T |
3402088 |
ttct |
3402091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 117 - 305
Target Start/End: Original strand, 3377977 - 3378164
Alignment:
| Q |
117 |
tactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaa |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||| | |||||||||| | |
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| T |
3377977 |
tactctttccagtggattgatatgtatcaggtagtggtaagcagttttctggcaaatgaacagtccgagcagaagctaagaacgcgggaaaatgaggtga |
3378076 |
T |
|
| Q |
217 |
cttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagat |
305 |
Q |
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| T |
3378077 |
cttcaacattaacgccaatggcagctgctcctgtgtctactgctggtacaatacctta-ctttcatcttcatcttccttccacggagat |
3378164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 3403244 - 3403371
Alignment:
| Q |
93 |
gtgacaagtttactgaattctcagtactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagc |
192 |
Q |
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|||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||| |
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| T |
3403244 |
gtgacaagtttatgcaattatcatcactctttccaatggattgatatgtatcaggtagtggtaggcagttttctgccaagtgaa---catgagcagaagc |
3403340 |
T |
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| Q |
193 |
tagaaacgcagaaaaatgaggtaacttcaac |
223 |
Q |
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|| |||| ||||| |||||||||| |||||| |
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| T |
3403341 |
taaaaacacagaataatgaggtaatttcaac |
3403371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 3369222 - 3369322
Alignment:
| Q |
168 |
gcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaacttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaa |
267 |
Q |
| |
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|||| |||||| ||||||||||||||| | || ||||| |||||||||| |||||| || || ||||| | |||||||| | ||||| |||||||| ||| |
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| T |
3369222 |
gcaagtgaacaacatgagcagaagctaaacacacagaagaatgaggtaatttcaacagtaacgccaactgtagctgctcgcatgtcttctgctggtccaa |
3369321 |
T |
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| Q |
268 |
t |
268 |
Q |
| |
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| |
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| T |
3369322 |
t |
3369322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 3394839 - 3394939
Alignment:
| Q |
168 |
gcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaacttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaa |
267 |
Q |
| |
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|||| |||||| ||||||||||||||| | || ||||| |||||||||| |||||| || || ||||| | |||||||| | ||||| |||||||| ||| |
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| T |
3394839 |
gcaagtgaacaacatgagcagaagctaaacacacagaagaatgaggtaatttcaacagtaacgccaactgtagctgctcgcatgtcttctgctggtccaa |
3394938 |
T |
|
| Q |
268 |
t |
268 |
Q |
| |
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| |
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|
| T |
3394939 |
t |
3394939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 3379876 - 3379931
Alignment:
| Q |
94 |
tgacaagtttactgaattctcagtactctttccaatggattgatatgtatcaggta |
149 |
Q |
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||||||||||| | |||||| | ||||||||||||||||||||||||| ||||||| |
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| T |
3379876 |
tgacaagtttattcaattctaattactctttccaatggattgatatgtgtcaggta |
3379931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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