View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_35 (Length: 322)
Name: NF19409_low_35
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_35 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 78724 - 78997
Alignment:
| Q |
10 |
aagaatattaatccagcaatcacatcatttatgctctgtggaaataatgagataaaaaatcattaattaattgagaatgtaaaattaatttctaagaaca |
109 |
Q |
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| T |
78724 |
aagaaaattaatccagcaatcacatcatttatgctctgtggaaataatgagataaaaaatcattaattaattgagaatgtaaaattaatttctaagaata |
78823 |
T |
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| Q |
110 |
aacaatgttactagttaatttagtgctattaaattgaagaatatttaatattttccttacacc--nnnnnnnnnnnnnnactccaacaacttcacctata |
207 |
Q |
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| T |
78824 |
aacaatgttactagttaatttagtgctattaaattgaagaatatttaatattttccttaaacctttttttcttttttttactccaacaacttcacctata |
78923 |
T |
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| Q |
208 |
aactcatctatgatatgatagtgccataaattagtggatgcaaaagggtagatgtaaaacaaaacaaagagtgtgac |
284 |
Q |
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| T |
78924 |
aattcatctatgatatgatagtgtcataaattagtggatgcaa---ggtagatgtaaaacaaaacaaagagtgtgac |
78997 |
T |
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