View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19409_low_36 (Length: 319)
Name: NF19409_low_36
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 2645986 - 2646187
Alignment:
| Q |
10 |
attattctaatgcacaa---tttgtgaatgatagtaggtagtaactagatttctagctagtagtcttcttattataagatatgaacaaatataaaaaata |
106 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2645986 |
attattctaatgcgcaagagtttgtgaatgatagtaggtagtaactagatttctagctagaagtcttcttattataagatatgaacaaatataaaaaata |
2646085 |
T |
|
| Q |
107 |
attgaagttatggattaacttctatgaaaactacaaagcaagttgtgaggttgacattatagagcactctagtagataacatgattgaagattatgtgac |
206 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2646086 |
attgaagttacggattaacttctttgagaactacaaagcaagttgtgaggttgacattatagagcactctagtagataacatgattgaagattatgtgac |
2646185 |
T |
|
| Q |
207 |
aa |
208 |
Q |
| |
|
|| |
|
|
| T |
2646186 |
aa |
2646187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 203 - 301
Target Start/End: Original strand, 2646239 - 2646337
Alignment:
| Q |
203 |
tgacaagagtaacattgttgaataatagaaaattttggaagattagatgtgagtgaaagaaaaatgagggggaatattagaaatgaacacacaaagact |
301 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2646239 |
tgacaagattaacattgttgaataatagaaaattttggaagattagatgtgagtgaaagaaaaatgagggggaatattagaaatgaacacacaaagact |
2646337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University