View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19409_low_38 (Length: 314)
Name: NF19409_low_38
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 167 - 299
Target Start/End: Complemental strand, 12322823 - 12322692
Alignment:
| Q |
167 |
ccattcgtccgtgacacacacaaaataaaaacacccatcccgtgaaatattctcatcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322823 |
ccattcgtccgtgacacacacaaaataaaaacacc-atcccgtgaaatattctcatcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatg |
12322725 |
T |
|
| Q |
267 |
tgaccacaaactgaaaatgaagactttctttct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12322724 |
tgaccacaaactgaaaatgaagactttctttct |
12322692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 12322987 - 12322908
Alignment:
| Q |
3 |
aatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatatcgttctacggtcactatttgac |
82 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||||| |
|
|
| T |
12322987 |
aatatttaaagatcagaagtgaaataaaaactattctaacatatcatatggttgatatcattctaccgtcactacttgac |
12322908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25912424 - 25912523
Alignment:
| Q |
1 |
tgaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatatcgttctacggtcactatttgacagcagagaatcattttcc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
25912424 |
tgaatatttaaagatcaaaagtgaaataaaaactattctaacaaattagacggttgatatcattctacagtcactatttgactattgagaatcattttcc |
25912523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 16495335 - 16495238
Alignment:
| Q |
2 |
gaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatatcgttctacggtcactatttgacagcagagaatcattttc |
99 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
16495335 |
gaatgtttaaagatcagaagtgaaataaaaactgttctaatagatcagacggctgatatcattctagagtcactatttgactgcagagaatcattttc |
16495238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5434980 - 5434921
Alignment:
| Q |
1 |
tgaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatat |
60 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
5434980 |
tgaatatttaaagataggaagtgaaataaaaactattctaatagatcagacggttgatat |
5434921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University