View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19409_low_4 (Length: 737)
Name: NF19409_low_4
Description: NF19409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19409_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 312 - 647
Target Start/End: Original strand, 21314454 - 21314788
Alignment:
| Q |
312 |
ttattgaggataattgtcttgcacggagagaaaatatattgtcgagtacaatttgtttcattatctcttgaggagagaaaagttattgtgagtgcaatta |
411 |
Q |
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| T |
21314454 |
ttatcgaggataattttcttgcacggagagaaaatatatggtcgagtacaatttgtttcattatctcttgaggagagaaaagttattgtgagtgcaatta |
21314553 |
T |
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| Q |
412 |
actttatagtctcaccacgagaaaatgttttttcgatgactatttgcttcatggtctcaaggggatagcaaaaagtattgtcaaagtcaattacatgcat |
511 |
Q |
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| T |
21314554 |
actttatagtctcgccacgagaaaatgtattttcgatgactatttgcttcatggtctcaaggggatagc-aaaagtattgtcaaagtcaattacattcat |
21314652 |
T |
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| Q |
512 |
agtctcatatggaaagtagatgtgtttatgaggacaataagcttaatggtcttgtggggagagaaaagtattgtcgaggacaaatacatgaataatctcg |
611 |
Q |
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| T |
21314653 |
agtctcatatggaaagtagatgtgtttctgaggacaataagcttaatgttcttgtggggagagaaaagtgttgtcgaggacaaatacatgaataatctcg |
21314752 |
T |
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| Q |
612 |
tagagtgagtaaatgtgtcgaacaaggaagatgggg |
647 |
Q |
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| T |
21314753 |
tagagtgagtaaatgtgtcgaacaaggaagatgggg |
21314788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 21314071 - 21314378
Alignment:
| Q |
9 |
caaaggatgcatatagtatcaacgaccaaatatgtgtatttggcctttctctatattaggtctatggtagacgaaacaatggtgggccgagagtacgatg |
108 |
Q |
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| T |
21314071 |
caaaggatgcatatagtatcaacgaccaaatatgagtatttggcctttctctatattaggtctatggtagacgaaacaatggtgggccgagagcacaatg |
21314170 |
T |
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| Q |
109 |
taggtcctcttatggtgttggatctatgttcaacatatggattgtcaagcatagcccttgtaccatcgagcgtatgctttggatcgtctagaaaatatct |
208 |
Q |
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| T |
21314171 |
taggtcctcttatggtgttggatctatgttcaacatatggattgtcaagcatatcccttgtaccatcgagcatatgctttggatcgtctagcaaatatct |
21314270 |
T |
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| Q |
209 |
tggaccatcgaacatagtccttt-ggaaatttagaacaattgccctcacatcatcaatcttgttgtataagagtggtgaatttgagcttgcagggggaaa |
307 |
Q |
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| T |
21314271 |
tggaccatcgaacatagtcctttgggaaattcaggacaattgccctcacatcatcaatcttgttgtataagagtggtgaatttgagcttgcaggggaaaa |
21314370 |
T |
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| Q |
308 |
aatgttat |
315 |
Q |
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| T |
21314371 |
aatgttat |
21314378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 673 - 712
Target Start/End: Original strand, 21314841 - 21314880
Alignment:
| Q |
673 |
aattatgcatttgcgaaagcgtgagtttgaaaactaattt |
712 |
Q |
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| T |
21314841 |
aattatgcgtttgcgaaagcgtgagtttgaaaactaattt |
21314880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 707
Target Start/End: Original strand, 21315203 - 21315237
Alignment:
| Q |
673 |
aattatgcatttgcgaaagcgtgagtttgaaaact |
707 |
Q |
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| T |
21315203 |
aattatgcgtttgcgaaagcgtgagtttgaaaact |
21315237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 51075761 - 51075833
Alignment:
| Q |
107 |
tgtaggtcctcttatggtgttggatctatgttcaacatatggattgtcaagcatagcccttgtaccatcgagc |
179 |
Q |
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| T |
51075761 |
tgtaggtcctcttatggtgttggatttatatctaaaatatgggttgttgagcatagcccttgaaccgtcgagc |
51075833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 7134459 - 7134517
Alignment:
| Q |
234 |
aaatttagaacaattgccc-tcacatcatcaatcttgttgtataagagtggtgaatttg |
291 |
Q |
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| T |
7134459 |
aaatttagaatagttgcccctcaaatcatcaatcttgttgaataagagtggtgactttg |
7134517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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